Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00374 ATGACCCAGATCCTCAATCTTGTTCTTGGAGTGGTTGCCATTGCAGTTGCGGCCATTATCATCTTCATCTTCTTGAAAAGAAGGGGAAAAGGGAAGGATGAATACAACGACACAGAGAGGAACCAGGAGAGGGAAAATGGGGAAGAAGAGAGAGAAGAATTGGTGAGTTTTCATGGCGGACAGGATCTTACCATTGTTGATATATTGGAAGCTCCAGGGGAAGTGATTGGAAAAGCCAGCCATGGAACTCTGTATAAGGCCTACCTGCAAGGAAGCAGCACTGTGAGGCTGCTGAGGTTCCTGAGGCCACTTTGTACTACTGGGTTTGAGGCTTTTGTTGCTCAGATTGAGTTCTTGGGTGACATTAGGCACCAAAATTTGGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAACAGAGAAGCTCCTGATTCATCCATTTTACAGGCATGGGAATCTGGCTCAGTTCATTAGAGATGGGAACAGCGACTCGCATCGATGGGCGGTAATAAACAAGATCTCGATTGGTATAGCGAAAGGATTGGATCATCTCCATACTGGTTTGCAAAAGCCAACAATCCATGGGAATCTACAGGCAAAGAATGTTCTTTTGAATCGAAACTACGAACCGTTGGTGTCGGATTTCGGCCTACATTTGCTGTTGAATTCATCTTCTGCACAAGAGTTGGTTGAAGCTTCAGCAGGCAATGGCTACAAAGCTCCTGAGTTGATCAAGATGAAGGATGCAAATGAGAAGAGCGATATCTATAGCTACGGCGTAATCTTATTTGAGTTACTGTCCGGAAAGGAACCGATCGACAAAAAAGCGAGTCCCGGTGAGGATTGTTACTTGCCTAACGTCATGAGAAATGCTGTTCTTGAGTATAGAATTGGAGAGCTGTTTCATCCTGAAATACTTGTATTTAGTAGCGTTGATGGAAACAGCGTCACTGAAGAAAAGATACTCAAATTCTTTCAGATTGCTATGGCTTGCTGTTCTCCTTCTCCAGCTCTTAGGCCAAGTATGAAGCGAGTGCTTCAAAAGCTCAACGAAATCAGCACATAA 1065 44.32 MTQILNLVLGVVAIAVAAIIIFIFLKRRGKGKDEYNDTERNQERENGEEEREELVSFHGGQDLTIVDILEAPGEVIGKASHGTLYKAYLQGSSTVRLLRFLRPLCTTGFEAFVAQIEFLGDIRHQNLVPLLGFYSGPRTEKLLIHPFYRHGNLAQFIRDGNSDSHRWAVINKISIGIAKGLDHLHTGLQKPTIHGNLQAKNVLLNRNYEPLVSDFGLHLLLNSSSAQELVEASAGNGYKAPELIKMKDANEKSDIYSYGVILFELLSGKEPIDKKASPGEDCYLPNVMRNAVLEYRIGELFHPEILVFSSVDGNSVTEEKILKFFQIAMACCSPSPALRPSMKRVLQKLNEIST 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1819841 1821386 - CmoCh04G003740.1 Cmo04g00374 379349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00374 354 Gene3D Phosphorylase Kinase; domain 1 41 147 - -
Cmo04g00374 354 ProSiteProfiles Protein kinase domain profile. 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00374 354 SUPERFAMILY Protein kinase-like (PK-like) 73 350 IPR011009 -
Cmo04g00374 354 Gene3D Transferase(Phosphotransferase) domain 1 149 354 - -
Cmo04g00374 354 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672|GO:0006468
Cmo04g00374 354 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 353 - -
Cmo04g00374 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 5 353 - -
Cmo04g00374 354 Coils Coil 32 52 - -
Cmo04g00374 354 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00374 Cmo-Chr4:1819841 Cmo15g01417 Cmo-Chr15:9662717 1.97E-96 dispersed
Cmo16g00232 Cmo-Chr16:1018435 Cmo04g00374 Cmo-Chr4:1819841 0 wgd
Cmo02g00984 Cmo-Chr2:6059094 Cmo04g00374 Cmo-Chr4:1819841 8.13E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74232 PF07714 PK_Tyr_Ser-Thr 9.00E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00374 - - csv:101206706 553.132