Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00407 ATGGGCACACGAACCCAGCAACCCTGCCACGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCCGGTCAGTCCGTTTCCATGAGTGGTAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCTCCTACTGCTAACGTGAAGAAAAAGAGGGGCCAGCGTGCAGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACGTACAACGAGGTAGCAGACGAACTCGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTATGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCGCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTGCCACGTACAAGCCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGGCTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCCCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCAGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAACATTGA 1050 49.81 MGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2006727 2012519 - CmoCh04G004070.1 Cmo04g00407 379382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00407 349 Pfam Transcription factor DP 185 292 IPR014889 -
Cmo04g00407 349 CDD DP_DD 182 285 IPR014889 -
Cmo04g00407 349 SUPERFAMILY Winged helix DNA-binding domain 97 178 IPR036390 -
Cmo04g00407 349 SMART DP_2 184 347 IPR014889 -
Cmo04g00407 349 Gene3D - 90 182 IPR036388 -
Cmo04g00407 349 MobiDBLite consensus disorder prediction 25 62 - -
Cmo04g00407 349 MobiDBLite consensus disorder prediction 1 97 - -
Cmo04g00407 349 Coils Coil 193 227 - -
Cmo04g00407 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 - -
Cmo04g00407 349 Pfam E2F/DP family winged-helix DNA-binding domain 97 177 IPR003316 GO:0005667|GO:0006355
Cmo04g00407 349 SMART E2F_TDP_2 94 177 IPR003316 GO:0005667|GO:0006355
Cmo04g00407 349 SUPERFAMILY E2F-DP heterodimerization region 183 303 IPR037241 -
Cmo04g00407 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 IPR015648 GO:0005667|GO:0051726
Cmo04g00407 349 Gene3D Transcription factor DP 183 312 IPR038168 -
Cmo04g00407 349 PIRSF Txn_factor_DP 5 349 IPR015648 GO:0005667|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00407 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00284 Cmo-Chr16:1278253 Cmo04g00407 Cmo-Chr4:2006727 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9527 PF08781 DP 3.50E-41 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00407 Cmo_Chr04 FPKM 35.284599 40.832188 24.757799 24.255205 22.259388 21.223928 23.059778 38.441452 39.159157 38.319534