Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00407 ATGGGCACACGAACCCAGCAACCCTGCCACGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCCGGTCAGTCCGTTTCCATGAGTGGTAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCTCCTACTGCTAACGTGAAGAAAAAGAGGGGCCAGCGTGCAGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACGTACAACGAGGTAGCAGACGAACTCGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTATGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCGCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTGCCACGTACAAGCCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGGCTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCCCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCAGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCAATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAACATTGA 1050 49.81 MGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2006727 2012519 - CmoCh04G004070.1 Cmo04g00407 379382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00407 349 Pfam Transcription factor DP 185 292 IPR014889 -
Cmo04g00407 349 CDD DP_DD 182 285 IPR014889 -
Cmo04g00407 349 SUPERFAMILY Winged helix DNA-binding domain 97 178 IPR036390 -
Cmo04g00407 349 SMART DP_2 184 347 IPR014889 -
Cmo04g00407 349 Gene3D - 90 182 IPR036388 -
Cmo04g00407 349 MobiDBLite consensus disorder prediction 25 62 - -
Cmo04g00407 349 MobiDBLite consensus disorder prediction 1 97 - -
Cmo04g00407 349 Coils Coil 193 227 - -
Cmo04g00407 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 - -
Cmo04g00407 349 Pfam E2F/DP family winged-helix DNA-binding domain 97 177 IPR003316 GO:0005667|GO:0006355
Cmo04g00407 349 SMART E2F_TDP_2 94 177 IPR003316 GO:0005667|GO:0006355
Cmo04g00407 349 SUPERFAMILY E2F-DP heterodimerization region 183 303 IPR037241 -
Cmo04g00407 349 PANTHER TRANSCRIPTION FACTOR DP 26 349 IPR015648 GO:0005667|GO:0051726
Cmo04g00407 349 Gene3D Transcription factor DP 183 312 IPR038168 -
Cmo04g00407 349 PIRSF Txn_factor_DP 5 349 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00284 Cmo-Chr16:1278253 Cmo04g00407 Cmo-Chr4:2006727 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9527 PF08781 DP 3.50E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00407 K04683 - csv:101216863 637.491