Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00409 ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCAACTATAGTGGTGATATATCATGCCTTTAACAGTAGAGGCCAGTTCTACCCAGCGTTGGTCTATTTATCAACTTCCAAGATCAATCTAGTGCTTCTTCTCAACATGGGTTTAGTCCTCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCTCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCGTGGAAGGAATTGATGGAAATCCTCTTTGCCATCACTATCTTTCGGCAAGATTTTTCTGTTGCATTCCTTGCTATGGTTACGGCTTTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATTGTTTCTTTCTTGGGTTTTCTCTTTGTTCTAGATAGTCTGTTTTTGTATAATTCGATAGGTTCTCTGATACAGACAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCCGTGTCAACATTTGTGAAATATATTTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAAAAAGCCTGTCTATACATTCTACTTGGAGCTTATCCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACATATGGCGTGCCTTTGCACTTGATCCGTGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATTCGGTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGGAGGTCATCAGGGATTGCAGTCTGATGCTAACCTACAAGGAACAGGAACCACAAGTTCGTCTGCACAAGGTTCGGGTGGTACAAGTGCTGCGGGTGATAGTTTGGGTCATCATCAGGCTAGAGTCCAGGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGGGAACACATTAGCATGGTATAGCTTTTTATTGCAAAATATGTGGTCCCTGTCTCCTGGATATGCAGTAATTCCTCAGGTTCAAAGACCTTTGCTTGACTCCAACAATGTAGAACCGATTGGAGAACAAGCTCCCAATGAACAAGCACAATATTTTCCATTTACAGGCGGCCCTGCAAACCTGTCCTTTACTCAAATCCCCCAAAATCTTTTTATTCCTTTTCAGCCACGAGAGGGCACTGTAAACAATACGGATGGATTGGGCAGTAGTCAAAATATATCAGGCTCACAGCTTGAATCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTACAAGATCAGCTGCAACTTCTCCGTAAACTGAAAGTCGAGGAAAGCTCAATAGCAGGCGAGGCAGACAAGAAAGGGAAAAGCATAGCATCATCGTCGCAGTCATCATCTTCATCAGTTTCTGATTCTCATCCACACGGAGAAACGGAAAGGACGGTGGGATAA 1704 42.25 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVLMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLAMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFLYNSIGSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHQGLQSDANLQGTGTTSSSAQGSGGTSAAGDSLGHHQARVQAAAAAASIYEKSYVYPFGNTLAWYSFLLQNMWSLSPGYAVIPQVQRPLLDSNNVEPIGEQAPNEQAQYFPFTGGPANLSFTQIPQNLFIPFQPREGTVNNTDGLGSSQNISGSQLESQERFLQQQIEILQDQLQLLRKLKVEESSIAGEADKKGKSIASSSQSSSSSVSDSHPHGETERTVG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2024454 2030582 + CmoCh04G004090.1 Cmo04g00409 379384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00409 567 MobiDBLite consensus disorder prediction 531 567 - -
Cmo04g00409 567 SUPERFAMILY RING/U-box 272 336 - -
Cmo04g00409 567 Pfam Ring finger domain 291 330 IPR001841 -
Cmo04g00409 567 SMART ring_2 292 329 IPR001841 -
Cmo04g00409 567 MobiDBLite consensus disorder prediction 340 377 - -
Cmo04g00409 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Cmo04g00409 567 Coils Coil 497 524 - -
Cmo04g00409 567 MobiDBLite consensus disorder prediction 540 556 - -
Cmo04g00409 567 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1B-LIKE 1 439 - -
Cmo04g00409 567 CDD RING-H2_synoviolin 289 330 - -
Cmo04g00409 567 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cmo04g00409 567 MobiDBLite consensus disorder prediction 342 374 - -
Cmo04g00409 567 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00409 Cmo-Chr4:2024454 Cmo04g01120 Cmo-Chr4:5713697 2.64E-11 dispersed
Cmo02g01067 Cmo-Chr2:6507069 Cmo04g00409 Cmo-Chr4:2024454 9.13E-24 transposed
Cmo16g00283 Cmo-Chr16:1272373 Cmo04g00409 Cmo-Chr4:2024454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00409 K10601 - csv:101215351 891.338