Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00411 ATGTCGGTGATGTTGCGTTCTTCGTCTTCTCTGTGGATAATTTTGGTGCTCCGGTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGTATGCATTGAAGTCGAATTTACAAGATCCCAACAGCGTATTGCAGAGTTGGGATCCAACACTTGTTAATCCCTGCACTTGGTTTCATGTCACCTGTGACAACGCGAATACTGTCATTCGAGTTGATCTTGGAAATGCAAATCTATCTGGTACATTAGTTCCACAACTTGGTCAGCTTCCGAGTTTACAGTATCTGGAACTCTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGATAATCTGCGTTTCCTGCGTCTTAACAACAACAGCTTGACAGGAACTATTCCAATGTCATTAACCACTGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAATCACCTAACTGGAGATATTCCGATCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGCTTTGCTAATAATAATCTAAATGAGTCTGCCGTTCGTCCTCCACCATCTCCTTTACCTTCTTCACCAACCCCCACATCAGGTAATTCTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGGTGCTGCTTTACTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGGAAGAAACCTCAAGATCATTTCTTTGATGTACCTGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTTGCTACAGATAATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGTCTGGCTGATGGATCTCTGGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGATTTTGTATGACACCAACTGAGCGGGTGTTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCGTGTTTAAGAGAGCGTTCAGAATCACAACCTCCACTTAATTGGTCGAACCGAAAACGCATTGCTTTGGGATCGGCAAGGGGACTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATAGGGATGTGAAAGCTGCAAACATTTTGCTTGACGAGGAGTTTGAAGCCGTGGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTAAGAGGAACAATTGGGCATATAGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAGAAGACTGACGTTTTTGGGTACGGGGTAATGCTCCTCGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTAAAAGACAAGAGGCTTGAAACGCTAGTCGATCCCGATTTTGCGGGAAACTATCCTGACAACGAAGTCGAGCAGCTCATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACCGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTCGAGGGTGATGGGTTATCTGAAAGATGGGAAGAATGGCAGAAAGAGGATCGGTTCCAACAAGAAGTAAGCCGCAATCCCCACCCAAGTACTACTTGGATTCTTGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGGTCCGAGATGA 1839 45.08 MSVMLRSSSSLWIILVLRFVSLLSANPEGDALYALKSNLQDPNSVLQSWDPTLVNPCTWFHVTCDNANTVIRVDLGNANLSGTLVPQLGQLPSLQYLELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLDNLRFLRLNNNSLTGTIPMSLTTVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFANNNLNESAVRPPPSPLPSSPTPTSGNSATGAIAGGVAAGAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSESQPPLNWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDFAGNYPDNEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLSERWEEWQKEDRFQQEVSRNPHPSTTWILDSTAEMPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2031640 2039868 + CmoCh04G004110.1 Cmo04g00411 379386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00411 612 PANTHER BNAA08G11770D PROTEIN 7 612 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cmo04g00411 612 Pfam Protein kinase domain 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00411 612 SMART serkin_6 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00411 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Cmo04g00411 612 MobiDBLite consensus disorder prediction 580 612 - -
Cmo04g00411 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 612 - -
Cmo04g00411 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cmo04g00411 612 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00411 612 SUPERFAMILY L domain-like 27 202 - -
Cmo04g00411 612 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Cmo04g00411 612 MobiDBLite consensus disorder prediction 200 222 - -
Cmo04g00411 612 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cmo04g00411 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cmo04g00411 612 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Cmo04g00411 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00411 Cmo-Chr4:2031640 Cmo09g01218 Cmo-Chr9:9420581 0 dispersed
Cmo19g00574 Cmo-Chr19:6551327 Cmo04g00411 Cmo-Chr4:2031640 2.92E-69 dispersed
Cmo20g01026 Cmo-Chr20:8810084 Cmo04g00411 Cmo-Chr4:2031640 2.39E-177 dispersed
Cmo04g00848 Cmo-Chr4:4233955 Cmo04g00411 Cmo-Chr4:2031640 0 transposed
Cmo16g00281 Cmo-Chr16:1265397 Cmo04g00411 Cmo-Chr4:2031640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74233 PF00069 Pkinase 6.40E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00411 K13416 - csv:101216389 1061.98