Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00421 | ATGGAAACTGAGTTTTTGGTTTTGGATTATGAACTGGTTCAGTTTTTGATTTTATGCATCATGTTTGTAGGAGGACGTTCGTCATGTAGCTCCGGAAAGGGCCGGGGCAATCAATGCCCTGCGAAATATGGTTTTAGTTTGGTAAAAGGCAAGGCAAATCATCCCATGGAAGATTATCATGTTGCTAAATTTATCACAGTGCATGGCCAGGAGCTTGGCCTCTTTGCTATATATGATGGGCACTTAGGAGATAGCGTACCAGCCTATCTACAGAAGCATCTATTTCCCAATATTCTCAAGGATGAGGAATTCTGGTCGAATCCGCGTAGCTCTATCTTTAAGGCGTATGAGACGACAGACCAAGCAATACTCTCGCACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTCGGAGATTCACGAGCAGTCCTTTCGAAAAGAGGGCAGGAAGTACAAATGTCTGTCGATCACGAACCGAACACTGAGCGTGGAAGCATCGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCTAGAGTGAACGGGCAACTCGCAGTTTCTCGAGCGTTTGGCGACAAGAACCTCAAAACACACTTACGATCTGATCCCGACATAAAGAACGCCGATATCAACTCTGACACCGAGCTTCTAATCTTAGCAAGCGATGGTCTATGGAAGGTCATGTCGAATCAAGAAGCCGTGGACATAGCGAGAAGAACTAAAGATCCCCAGAGGGCAGCAAAGCAACTAGCAGCAGAAGCACTGAAACGGGAAAGCAAAGACGACATCTCGATCATCGTCGTTCGTTTCAAAGGGTAA | 876 | 46.0 | METEFLVLDYELVQFLILCIMFVGGRSSCSSGKGRGNQCPAKYGFSLVKGKANHPMEDYHVAKFITVHGQELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYETTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKRGQEVQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADINSDTELLILASDGLWKVMSNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2094354 | 2097469 | + | CmoCh04G004210.1 | Cmo04g00421 | 379396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00421 | 291 | CDD | PP2Cc | 42 | 289 | IPR001932 | - | |
Cmo04g00421 | 291 | ProSiteProfiles | PPM-type phosphatase domain profile. | 42 | 289 | IPR001932 | - | |
Cmo04g00421 | 291 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 22 | 290 | - | - | |
Cmo04g00421 | 291 | PANTHER | PROTEIN PHOSPHATASE 2C | 22 | 290 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo04g00421 | 291 | SUPERFAMILY | PP2C-like | 39 | 290 | IPR036457 | - | |
Cmo04g00421 | 291 | Pfam | Protein phosphatase 2C | 51 | 282 | IPR001932 | - | |
Cmo04g00421 | 291 | SMART | PP2C_SIG_2 | 53 | 289 | IPR001932 | - | |
Cmo04g00421 | 291 | SMART | PP2C_4 | 38 | 287 | IPR001932 | - | |
Cmo04g00421 | 291 | Gene3D | - | 38 | 291 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01653 | Cmo-Chr1:12520186 | Cmo04g00421 | Cmo-Chr4:2094354 | 6.96E-150 | dispersed | |
Cmo04g00421 | Cmo-Chr4:2094354 | Cmo09g00547 | Cmo-Chr9:2610033 | 1.53E-147 | dispersed | |
Cmo16g00270 | Cmo-Chr16:1199573 | Cmo04g00421 | Cmo-Chr4:2094354 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00421 | K17506 | - | csv:101214223 | 511.146 |