Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00449 ATGGCGGCTACACACAGCTTATCCTCTGCTGCACTCTCATCGTCTTCCTCTTCCTTTTTCTCGCACTCCAGTTTCAATGCCAAGAATCCGAAGGTATCATTTCCAGGAACAAGGTTCCGCGTCAAGTGTGTCGCAACGTCTCAAGATTCTATGACAGCCTACAAAACATCGGTCCCTCGAAATGCGAACATGGCCAAACTTCAAGCTGGATACCTTTTTCCCGAGATTGCAAGGAGAAGGAATGCGCACTTGCAGAAGTATCCTGATGCGAAAGTCATTAGCCTTGGAATTGGTGACACTACTGAGCCTATTCCTGAGGTTATTACATCGGCCATGGCAAAGAGATCACATGCATTGTCCACACTAGAGGGTTACAGTGGATATGGGGCTGAGCAGGGCGAAAAGCCAGTGAGAGCTTTAATTGGCAAAACATTTTATAGCGGCCTTGGCATAGAAGAAGATGATATCTTTGTTTCTGATGGCGCAAAATGTGACATAACACGTCTTCAGCTTGTTTTTGGCTCCAATGTGTCAATGGCAGTGCAAGATCCATCATACCCGGCTTATGTGGACTCGAGCGTCATCTTGGGGCAGACTGGACAGTACGAAAAGGATGCTGAAAAGTATGGCAATATTGAATACATGAGATGTACTCCAGAAAATGGATTTTTTCCGGATTTAACTAAGATTCCCCGAACAGATATCATATTTTTCTGTTCACCAAACAATCCTACCGGCTCTTCCGCAACCAGGGAACAGTTAACCCAACTGGTGCAGTTTGCTAAAAAGAATGGGTCAATTATAGTCTATGATTCTGCATATGCAATGTATATATCAGACGATAATCCAAGATCTATCTTTGAAATTCCTGGAGCGAAGGAGGTTGCAATTGAGACATCATCATTTAGCAAGTATGCTGGATTTACTGGAGTTCGTCTTGGTTGGACAGTTGTCCCAAAGGAGCTTATGTTTTCTGATGGATTTCCCGTTGCTAAAGATTTCAACCGCATTGTTTGTACTTGCTTCAACGGCGCATCCAACATTGCCCAAGCTGGGGGTTTGGCTTGTCTTTCGCCAGAAGGGCTTGAGGCTATGCGCGGGGTTATTGGTTTTTACAAAGAAAACACCAGTATCATTATGGACACATTCAACTCGCTTGGGTTTAATGTGTATGGAGGGAAAAATGCACCATATGTGTGGGTTCGTTTCCCTGGCCGGAGTTCGTGGGATGTATTTGCTGAGATACTAGAGAAAACACATGTCGTGACAACCCCTGGAAGCGGTTTTGGACCTGGTGGCGAAGGATTTATCAGGGTAAGTGCTTTTGGTCACAGAGAGAATGTCTTGGAAGCTTGCAGAAGATTCAAGCAGCTATACAAGTGA 1383 44.76 MAATHSLSSAALSSSSSSFFSHSSFNAKNPKVSFPGTRFRVKCVATSQDSMTAYKTSVPRNANMAKLQAGYLFPEIARRRNAHLQKYPDAKVISLGIGDTTEPIPEVITSAMAKRSHALSTLEGYSGYGAEQGEKPVRALIGKTFYSGLGIEEDDIFVSDGAKCDITRLQLVFGSNVSMAVQDPSYPAYVDSSVILGQTGQYEKDAEKYGNIEYMRCTPENGFFPDLTKIPRTDIIFFCSPNNPTGSSATREQLTQLVQFAKKNGSIIVYDSAYAMYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELMFSDGFPVAKDFNRIVCTCFNGASNIAQAGGLACLSPEGLEAMRGVIGFYKENTSIIMDTFNSLGFNVYGGKNAPYVWVRFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENVLEACRRFKQLYK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2232114 2242231 - CmoCh04G004490.1 Cmo04g00449 379424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00449 460 SUPERFAMILY PLP-dependent transferases 71 455 IPR015424 -
Cmo04g00449 460 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 60 457 IPR019942 GO:0008483
Cmo04g00449 460 CDD AAT_like 93 457 - -
Cmo04g00449 460 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 11 460 - -
Cmo04g00449 460 Gene3D - 102 359 IPR015421 GO:0003824
Cmo04g00449 460 Hamap LL-diaminopimelate aminotransferase [dapL]. 59 458 IPR019942 GO:0008483
Cmo04g00449 460 PANTHER AMINOTRANSFERASE 11 460 IPR019942 GO:0008483
Cmo04g00449 460 Pfam Aminotransferase class I and II 91 455 IPR004839 GO:0009058|GO:0030170
Cmo04g00449 460 Gene3D Aspartate Aminotransferase, domain 1 72 456 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00449 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - csv:101217452 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00449 Cmo-Chr4:2232114 Cmo04g00857 Cmo-Chr4:4278073 2.90E-14 dispersed
Cmo15g00047 Cmo-Chr15:286951 Cmo04g00449 Cmo-Chr4:2232114 0 transposed
Cmo16g00312 Cmo-Chr16:1429347 Cmo04g00449 Cmo-Chr4:2232114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g813 . . . . . . Bma05g00631 . . . . . . . . . . . . . . . . . Cla10g00945 Cam10g0968 Cec10g1002 Cco10g0963 Clacu10g0990 Cmu10g1773 Cre10g1147 Cone12ag1018 Cone8ag1048 . . . . . . . Blo13g00238 . . . Bpe05g00455 . . . Cmo04g00449 . . . . . Cpe14g00243 Cpe01g00377 Bhi11g01087 . . . Hepe07g0382 Mch10g0394 . . . . . . . . Lsi03g00994 . . Cme07g02224
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00449 Cmo_Chr04 FPKM 21.642057 25.244757 25.517153 26.491375 21.0117 26.579205 24.59136 38.363598 39.245296 35.652287