Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00453 ATGTGGACTCAAACTCCTTCGATCATGGCCGTTTTCATGGCCACTTTCATGTTCTTCCTCGCCCTAACCAACGCTCAAAACGCCCCCCGTGACTACCTCGCGCTTCACAACCGCGTTCGAGCCCAAGTCGGTGTCGGCCCCATGCAATGGAGCAACACCGTTGCTGCGTACGCTCAAGCCTATGCAGAAAAAAGAAAGGGAGACTGTGCTATGATTCACTCAACCGGACCGTACGGCGAAAACATAGCTACAGGGTACTACCCTGAGTTCACTGGGATGGATGCAGTGAAGCTGTGGGCGAAAGAGAAGCCGTTGTATGATTATGCGTCAAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGAAGCTCAGTGCGACTTGGATGTGCTAGAGTGCCCTGCAAGAGTAATTCTCAGTTTGTTGTTTGCAATTATGATCCTCCTGGCAACTATATTGGAGACAAGCCTTATGATTCTTCAGTCTGA 501 50.5 MWTQTPSIMAVFMATFMFFLALTNAQNAPRDYLALHNRVRAQVGVGPMQWSNTVAAYAQAYAEKRKGDCAMIHSTGPYGENIATGYYPEFTGMDAVKLWAKEKPLYDYASNKCVGGECGHYTQMVWRSSVRLGCARVPCKSNSQFVVCNYDPPGNYIGDKPYDSSV 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2255787 2256287 + CmoCh04G004530.1 Cmo04g00453 379428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00453 166 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 162 IPR001283 -
Cmo04g00453 166 Gene3D CAP 22 166 IPR035940 -
Cmo04g00453 166 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cmo04g00453 166 PRINTS Venom allergen 5 signature 48 66 IPR002413 -
Cmo04g00453 166 PRINTS Venom allergen 5 signature 93 108 IPR002413 -
Cmo04g00453 166 PRINTS Venom allergen 5 signature 117 136 IPR002413 -
Cmo04g00453 166 Pfam Cysteine-rich secretory protein family 33 150 IPR014044 -
Cmo04g00453 166 SMART SCP_3 27 158 IPR014044 -
Cmo04g00453 166 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cmo04g00453 166 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cmo04g00453 166 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Cmo04g00453 166 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cmo04g00453 166 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cmo04g00453 166 CDD CAP_PR-1 29 162 - -
Cmo04g00453 166 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 162 - -
Cmo04g00453 166 SUPERFAMILY PR-1-like 19 163 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00453 K13449 PR1; pathogenesis-related protein 1 - csv:105436021 267.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00453 Cmo11g01434 CCT
Cmo04g00453 Cmo19g00538 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00453 Cmo-Chr4:2255787 Cmo04g02128 Cmo-Chr4:14172618 7.95E-114 dispersed
Cmo04g02141 Cmo-Chr4:14697857 Cmo04g00453 Cmo-Chr4:2255787 3.13E-55 dispersed
Cmo19g00538 Cmo-Chr19:6261258 Cmo04g00453 Cmo-Chr4:2255787 5.18E-60 dispersed
Cmo19g00541 Cmo-Chr19:6275721 Cmo04g00453 Cmo-Chr4:2255787 8.42E-61 dispersed
Cmo04g00453 Cmo-Chr4:2255787 Cmo04g00454 Cmo-Chr4:2257971 3.07E-94 tandem
Cmo11g01431 Cmo-Chr11:10080619 Cmo04g00453 Cmo-Chr4:2255787 1.08E-54 wgd
Cmo19g00535 Cmo-Chr19:6242865 Cmo04g00453 Cmo-Chr4:2255787 2.88E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00453 Cmo_Chr04 FPKM 3.815302 5.474995 0.879368 0.826841 1.365728 2.018503 1.704746 1.045068 0.692761 1.196119