Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00457 ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTCACTCGAAATCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAACTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAACTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCACCCCCGCAATTCTTCCCGACTCCGACACCTGCAAACCCGAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 48.33 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2268965 2269712 - CmoCh04G004570.1 Cmo04g00457 379432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00457 219 PANTHER MADS BOX PROTEIN 5 177 - -
Cmo04g00457 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cmo04g00457 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cmo04g00457 219 Gene3D - 83 175 - -
Cmo04g00457 219 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 Coils Coil 138 165 - -
Cmo04g00457 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cmo04g00457 219 Coils Coil 93 120 - -
Cmo04g00457 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Cmo04g00457 219 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00457 Cmo-Chr4:2268965 Cmo17g00085 Cmo-Chr17:449915 4.15E-37 dispersed
Cmo04g00457 Cmo-Chr4:2268965 Cmo07g00118 Cmo-Chr7:667194 6.69E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9529 PF00319 SRF-TF 3.50E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00457 - - csv:101221957 380.948