Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00459 ATGGCGCCGCCGTCACACAGGTCGTCTTCTCCGTCGATGGTCGCCGGGAGAGCAAGCCCTAATTCCAGAAATTCCGAAATCGTTAACCCTACCCGCCGGAGCTTCTCCAGCGAACCGAGGAGCTTGAACTTTAACACTCCGACGAACAGTCCCTCTGATTATCCACGAAGGAATTCTACCAGCAGAGAAAATTTGTTTTATTCTCGTGACAATGAGGAGAAAGAAAATGGGAAAAATCAGAGTCCAAAACCTGTTCGAATCCGTTCGCCGGCGGCCGGAAAATCGACGAAGCACTTTATGTCTCCGACGATCTCTGCCGCCTCCAAGATTTCTGTCTCTCCGAAAAAGAAAATTCTGGGTGATCGGAACGAGCTAGTTCGGTCGTCTCTTTCATTTTCCGGCTTGAAAAGCTCTTCACTCAACTCGGTGAATCCAAATCCGGAGGCATCAGCGGCACTTGAATCCGATACGAATCAGGAAATTGCTCCGATTTCAAATCCCAAGAAATCCACATACCGATACGATACAGAAGTAGCACCAGTGGCAGTTGAAACCGATACGAAGTCGGAAACCGCCCCGATTTCAAAATCCACCATTGCAGCAGCACCTCTCAGAGCTTCCAAAACAGTGAAATCCGGTGGTTTGGATGTCATTTCTGATTCGCATTCAAATTCTGAGGTGGTAACAATGGCAGTTGAAACCGACGCGAAGCTTGAAATTACTCGGATTTCAAATTCTGCCATTGCTGCATTACCTCCCAAAGCTTCAGAGGCCGTGGAATTTGCTGATGTCGAGGTAAGCTCTGACCCAAACAACGACTCAGAGTCTCCGGCTAAGACTGTTGATCTCAACTCAAGTTTTAAGGACAGTCTTGTTTCTTCTTCAATGGAAATAGCACCGCTCGATGCCGATCCATTAATGCCGCGTCCTTATGATCCCAAAACCAATTACCTATCCCCAAGGCCACAGTTCCTCCATTACAAACCAAGAAGAATCAATCAACTCGAACTAGACGGCAAACTTGAGGAACTGTTTTCCTCTGAATCTGAATTCAGTGAGGGAACTGACTCGGAAGATCCACAGATGGAATCTGATGAAGCTTCTTCCAATGAATCGCATATGAAAGAAGAAGAAAGGGAAGAGGGGGAGGAGGAGGAAGAAGTGATTGTTAACGTTTCTGAACAAAGCCCCGTTGAAGCTAAGACTTCATCTAAGCTGCACTTTTCCAGGATATTCAAGATCAGTTCTCTGCTTTTGATTCTGTTGACTGCTTGCTTTTCGATTTGTGTTGTTAATGTTCATGATCTCGAAAGAGCGAGCTTGTGGTTACCAATGGAGGATTCAACAGAAGTTTTCGAGTTTGCAAAAACGAATTTCAATGTGCTGGTGCGGAAATTTGAGGTTTGGCATGCTAGTTCCAGACCTTACATTTCTGATATGGTTTTCAACATCGGAGGGCGGCGGCCATTGATTTATCTTAACCAAACTGGATTCTTACACAAAGATGTCAATTCGGAAGAGCAGTGCCTTGTATTATCTCATCAGACCTCGTGGGAAGAAGAAAATGATCTGAACGTAATGGAAGAAGCGAGGAAGGAGGGAGAAATAGACATTGTTGAAGAACATATCGTGAGAGGAGATCATAATGAAGAAGAAGAAGAACTATTATTGGAAGAGATTGAAGCCATGAAGGAGAGAGAAATTGTCATCGAACACGTTGAAGGAGAAGTTCAGAATGAAGAAGAATCGTTTCAAGAGATTGAAGCCGATGCAAATGATTCAAAAGACGGTGAAGAAGAGAACGGCCAGGCTTCAGCAAATTCAGCTTCTGAAGAACCATTGCAAGAGACTGAAGAAGGATCATTGCAAGAGATTATTGAAGAGACCTCTACAAAATCAGCTTCTGATAAACTCAATGAAGAAGACGAAATCCAGGAGAAGCAAACTGAAGAGAATTACGAAGATTCCTCATCACCAGATTTTATTCACGATCAAATTGAACAAGAAGCTGCAACAGGAGGCGAGACAAAAGAAGAACAACAAAACGATTCAATTCAACAAAGAAACGCAGAAATTCAACGGCAATCACCTCCAGTTTCTCCTCCTTCTGCACCTCAATCTGACGCTGAAGACGAAAATGACAGCAACATCGATCTCGTTGGAACTGCAACCAATAACAGAATCTCAAGAGATTTCTCACAGAACACTGCAGTTATAGCATCTGCAATACTGCTGGGTTTATCTATGATCATACCTGCAGGACTGATTTATGCGAGAAAATCAGGCTCAAAAACATCATCCATGGCGGCCATTGCTGAAGCGCAAGAGGAACCGCCATTGCTGAAAGAGAAGAAGACATACCAGAGTCCGGCGGTACCAGAAGAAGAAGAAGCGATTAATGATGATGATCGTGAGGATATCGCCAGAAAAGGATTTTGCTCTTCTGAAACGAGCAGTTTCCTGCAATACAGCAGCATGAAAGAAGAAGAAAAAGCGATTAATGATGACGATCGCGAGGATATCGCCATAAAAGGATTTTGCTCTTCTGAAATGAGCAGTTTCCTGCAATACAGCAGCATGAAAGAAGAAGACGAAACAGAAACATCTAAGATATTGATAGAAGCTCAAAACCATAGCCATGGGAGGAAGACGAGGAAGAATTCAAGAACTCCAATGGCTTCTTCTTCTTTGGATGAATTTTCAGTGTCCACTTCGTCGGCTTCTCCATCGTATGGGAGCTTCACAACTTATGAGAAGATCCCAATCAAGCATGGAAACGAAGAGGAAGAGATTGTGACTCCAGTAAGACGTTCAAGTAGAATTAGAAAGACCGCAGCACATCGACAGTCGTTTGCTGAATGA 2862 43.89 MAPPSHRSSSPSMVAGRASPNSRNSEIVNPTRRSFSSEPRSLNFNTPTNSPSDYPRRNSTSRENLFYSRDNEEKENGKNQSPKPVRIRSPAAGKSTKHFMSPTISAASKISVSPKKKILGDRNELVRSSLSFSGLKSSSLNSVNPNPEASAALESDTNQEIAPISNPKKSTYRYDTEVAPVAVETDTKSETAPISKSTIAAAPLRASKTVKSGGLDVISDSHSNSEVVTMAVETDAKLEITRISNSAIAALPPKASEAVEFADVEVSSDPNNDSESPAKTVDLNSSFKDSLVSSSMEIAPLDADPLMPRPYDPKTNYLSPRPQFLHYKPRRINQLELDGKLEELFSSESEFSEGTDSEDPQMESDEASSNESHMKEEEREEGEEEEEVIVNVSEQSPVEAKTSSKLHFSRIFKISSLLLILLTACFSICVVNVHDLERASLWLPMEDSTEVFEFAKTNFNVLVRKFEVWHASSRPYISDMVFNIGGRRPLIYLNQTGFLHKDVNSEEQCLVLSHQTSWEEENDLNVMEEARKEGEIDIVEEHIVRGDHNEEEEELLLEEIEAMKEREIVIEHVEGEVQNEEESFQEIEADANDSKDGEEENGQASANSASEEPLQETEEGSLQEIIEETSTKSASDKLNEEDEIQEKQTEENYEDSSSPDFIHDQIEQEAATGGETKEEQQNDSIQQRNAEIQRQSPPVSPPSAPQSDAEDENDSNIDLVGTATNNRISRDFSQNTAVIASAILLGLSMIIPAGLIYARKSGSKTSSMAAIAEAQEEPPLLKEKKTYQSPAVPEEEEAINDDDREDIARKGFCSSETSSFLQYSSMKEEEKAINDDDREDIAIKGFCSSEMSSFLQYSSMKEEDETETSKILIEAQNHSHGRKTRKNSRTPMASSSLDEFSVSTSSASPSYGSFTTYEKIPIKHGNEEEEIVTPVRRSSRIRKTAAHRQSFAE 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2280384 2285622 + CmoCh04G004590.1 Cmo04g00459 379434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00459 953 MobiDBLite consensus disorder prediction 347 396 - -
Cmo04g00459 953 Coils Coil 375 395 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 601 616 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 66 81 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 6 65 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 298 322 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 928 953 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 630 662 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 1 107 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 670 684 - -
Cmo04g00459 953 Coils Coil 570 590 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 888 910 - -
Cmo04g00459 953 PANTHER TRANSMEMBRANE PROTEIN 1 944 - -
Cmo04g00459 953 Coils Coil 675 695 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 874 910 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 264 285 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 782 806 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 267 285 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 134 168 - -
Cmo04g00459 953 PANTHER TRANSMEMBRANE PROTEIN 1 944 - -
Cmo04g00459 953 MobiDBLite consensus disorder prediction 575 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00459 - - - cmax:111475455 1547.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00459 Cmo16g00320 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00320 Cmo-Chr16:1463782 Cmo04g00459 Cmo-Chr4:2280384 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00459 Cmo_Chr04 FPKM 3.508897 2.726203 3.43937 4.064905 11.085197 8.813605 10.139036 7.287145 9.37832 9.286419