Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00460 ATGACGGAGGTGAGTGCTATGATGATTCGTGCTTGTTGCAATTTCGTTGCTAAAACCTCTGTGTTAGATGTGAAACGATCGGATTCTCGTTTGTCGGTTATCGGTCGAACAGTTTGGTGCGATCGGGGTAGGATGAAGGGGAGAGTTGTAACTGGAGTTAAGGCGGCAATGCAGGTGGATTTGGAGGATGATGAGAGGTTGAAACGATTGGACGGTTTAGAGGCGACATTAGGGCTTGATGTTGTGGCGGAGAGGGAATTGAAGGAGAAAGGGTTTTTGGGGATGAGGAAGACGAAGTTTGTTTGTACGATTGGGCCTGCGTGTTGTGCGATTGAGGATTTGGAGAAGTTGGCTTTGGAAGGTATGAACATTGCGAGATTGAATATGTGTCACAACAAGAAGGAGTGGCACTATGACGTGATTAGGAAGATCAAGAAGTTGAATGAAAAAGGATTTTGTATTTCGGTGATGATTGATACTGAAGGAAGTCAGATTCATGTTGTTGATCATGGAGCTCCTTTCTCCGTCAAAGTAGAGGATGGTTCAAATTGGTTGTTTACTGCTGAGAAATTCGAGGGCTCTCGTCCATTTACTGTTCAAGCGAGCTATGAAGGTTTTTCTGAAGGTATCCAAGTGGGTGATTCAATTGTGATTGATGGGGGAATGGCATCCTTTGAAGTTATGGAAAAGATTGGGAATGATTTAAGCTGTAAGTGCACAGACCCTGGTTTGTTTCTTCCTCGAGCAAAATGCAGCTTTTGGAGGGATGGGAGGCTTGTTATGAGAAAACATGAGTCTCCCACGCTGTCAAGTAAGGATTGGTCCGACATTGAATTTGGAATCTCGGAAGGCGTCGACTTCATTGCCCTTTCCTTTGTGAACAGTGCAGATTCTGTCAAGCATCTAAAGAGCTACCTATCAGCAAAATCAGCAAAATCTGTGAGAGTATTGGCCAAGATTGAAAGCTTGGAGTCCCTTCAAAATCTAGAAGAAATCATAAAGGCTTCTGATGGAATCATGGTGGCTCGAGGGGATCTTGGGGTTGAAATTCCTCTCGAGCAGATACCAGCAGTCCAAGAAGAGATAACTAGTGTCTGTAGGGAGCTGAACAAACCAGTGATCGTAGCTTCTCAACTTCTAGAGTCGATGGTTGAATATCCTACTCCAACACGTGCTGAGGTTGCAGATGTTTCTGAAGTTGTCCGACAGTATGCCGATGCATTGATGCTGTGTGGAGAGTCTGCCATAGGATCATATGGACAGAAAGCGCTTTCGGTTCTGCAGATAGCCAGCAGCCGAATGGAGTTATGGAGTGGTGAAGAAAATACGAAACATTTCCTTCCCCAACACCAACTTGGGGTGTCATTGCACGATCGCATTGCCGAAGAAATTTGCAATTCTGCAGCTGAATTGGCCAACAAACTTTCAGTAGACGCTATATTCGTGCTCACAAAGCAAGGTCACATGGCTTCTCTTCTATCCCGAAACCGCCCCAGCCCGCCTATATTCGCATTAACCGACGACGACAGCACGAGAATGGCTTTGAATCTTCAATGGGGAGTGTTTCCTCTGCGCATTGACCTCTCAGACGACATAGAAGCCAACATCTCAAGAGGAATCGAGCTAGTGAAGTCAAAGGGACTGGTCAAACAGGGGGACTTCGTGTTGATGGTCTCAGAGATCTCTGCAGCTCGAGCTGCATCAATGGCGTCCCAATCAATCCAGCTGAAATCCATCGTGTAG 1743 45.84 MTEVSAMMIRACCNFVAKTSVLDVKRSDSRLSVIGRTVWCDRGRMKGRVVTGVKAAMQVDLEDDERLKRLDGLEATLGLDVVAERELKEKGFLGMRKTKFVCTIGPACCAIEDLEKLALEGMNIARLNMCHNKKEWHYDVIRKIKKLNEKGFCISVMIDTEGSQIHVVDHGAPFSVKVEDGSNWLFTAEKFEGSRPFTVQASYEGFSEGIQVGDSIVIDGGMASFEVMEKIGNDLSCKCTDPGLFLPRAKCSFWRDGRLVMRKHESPTLSSKDWSDIEFGISEGVDFIALSFVNSADSVKHLKSYLSAKSAKSVRVLAKIESLESLQNLEEIIKASDGIMVARGDLGVEIPLEQIPAVQEEITSVCRELNKPVIVASQLLESMVEYPTPTRAEVADVSEVVRQYADALMLCGESAIGSYGQKALSVLQIASSRMELWSGEENTKHFLPQHQLGVSLHDRIAEEICNSAAELANKLSVDAIFVLTKQGHMASLLSRNRPSPPIFALTDDDSTRMALNLQWGVFPLRIDLSDDIEANISRGIELVKSKGLVKQGDFVLMVSEISAARAASMASQSIQLKSIV 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2287623 2292560 + CmoCh04G004600.1 Cmo04g00460 379435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00460 580 Pfam Pyruvate kinase, alpha/beta domain 462 563 IPR015795 -
Cmo04g00460 580 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Cmo04g00460 580 Gene3D - 98 428 IPR040442 -
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 152 168 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 285 299 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 Gene3D - 164 266 IPR015806 GO:0004743|GO:0006096
Cmo04g00460 580 SUPERFAMILY PK beta-barrel domain-like 165 252 IPR011037 -
Cmo04g00460 580 PANTHER PYRUVATE KINASE 39 579 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 90 435 IPR015813 GO:0003824
Cmo04g00460 580 Pfam Pyruvate kinase, barrel domain 95 429 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 TIGRFAM pyruv_kin: pyruvate kinase 96 565 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo04g00460 580 Gene3D - 437 575 IPR036918 -
Cmo04g00460 580 SUPERFAMILY PK C-terminal domain-like 458 560 IPR036918 -
Cmo04g00460 580 PANTHER PYRUVATE KINASE 39 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00460 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101220786 985.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00460 Cmo16g00321 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00460 Cmo-Chr4:2287623 Cmo08g01093 Cmo-Chr8:7016518 0 dispersed
Cmo16g00321 Cmo-Chr16:1468814 Cmo04g00460 Cmo-Chr4:2287623 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00460 Cmo_Chr04 FPKM 11.239448 12.063853 11.494547 11.580542 15.12058 14.07167 15.33073 15.886901 17.169903 16.914972