Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00463 ATGAAATTGCGGCTGAGATCCCTAGATTTCCAAGAGACCGTCGGAATTGAAGTCCCCGATCAATGTTCCTTCGAGCACCTGAAACTTACGCTCCTCCAAACACTCTCGTCTTCCGTTTCCGCCGATTCTCTTCATCTCTCTCTCAATCAAAAAGACGAGCTCCAAGTATCATCGGAGGAGGATTCGCTCTGCTCCATTGGTATTACTTCCGGTGATCTTGTTTTCTTCACTTTTAATTCTTCGCAATTTCCCCCTCGGGGAGAGAGGTCGATTCAATCTTCTCCAGGACCTCTTCCTGATGTTTATCCACAAGATTCGTCTTCGTCGCGACCGCAGGTTGAAGGAGAGCAAATTCAGGGTAGCGATTTTGACCTTAAAGATCCTAGGTTGGAGAATTTTGAACCTGTATTCCTCGGACCCGAGTCTTTGGATGCGGAAGCAACTACCGGTGGTACGATCGAGGAAGAGGAGAGAATCTTGGAGTCAGATTCCGAAGAAATGAACGCCGAGGATGAACCGATCGGAGATGTGGAAAAGAAATGTTCAAAGCCGATTTTCTTGAGGAGAGTGATGGAGGAGGAGTTAGGCTATGGTGATTGTAATGCTCACAAGCTTTTATTAACTGCCGTTCACGCTGTACTCTTGGAATCTGGATTCGTTCTGGTTGGTCCTATTTTAGGTTCTGAGATTAGCCGTATCCACATGCCGGAAGACTGGCCTTCGCGATCATTTTCGATCTCACTCCGGTACACTTTACCTCAACTTTTGGCCGAAGAAGGCAAAAACTCCATTAAAACCGAGGTAGTTTTATTGAAGTTTCAGAGTTTGGGGAACTTTCTTAATGTTTATGGATCTCTTAGCTGCAGTAAAGGATCAGATGTTTATAGTGTATCTTTGGATGAAAGAAAATTTACACCCAATCTTCTTTCGATTTGGATGGATCCAGTGTCCAGCCACATAATAGACGAACACGAAGAGAATCCAGAGAGGCAAGTTCTTGAATTCTGGAAGATAGTGAAGGATGCTATTTCATTCCCACTCTTGATTGATCTCTGTGAAAAAACTGGCCTGTGTCCTCCTTCAAGCTTTATGCAACTTCCAGAGGATTTGAAGCTGAAGATCTTGGAGTCTCTTCCTATTGAGGACATTGCAAGTGTTCAATATGTGTGTACTGAATTGCGTCAATTGGTATCCAGTAATGAGCTATGGAAGGTGAAGTTCAATCAAAAACTTGCTTTAGGGGAGGGTGCTGTTCTTCCAGGAAAGAAAACGCCAGCATCGCGCAAACCTGAACATAGACTTCCACGACGAGTTGCTCGGATTCCGAGGCGAAACGCTTTCATGTCGCATTCTCGTTTGAGAGGACGATGA 1371 44.78 MKLRLRSLDFQETVGIEVPDQCSFEHLKLTLLQTLSSSVSADSLHLSLNQKDELQVSSEEDSLCSIGITSGDLVFFTFNSSQFPPRGERSIQSSPGPLPDVYPQDSSSSRPQVEGEQIQGSDFDLKDPRLENFEPVFLGPESLDAEATTGGTIEEEERILESDSEEMNAEDEPIGDVEKKCSKPIFLRRVMEEELGYGDCNAHKLLLTAVHAVLLESGFVLVGPILGSEISRIHMPEDWPSRSFSISLRYTLPQLLAEEGKNSIKTEVVLLKFQSLGNFLNVYGSLSCSKGSDVYSVSLDERKFTPNLLSIWMDPVSSHIIDEHEENPERQVLEFWKIVKDAISFPLLIDLCEKTGLCPPSSFMQLPEDLKLKILESLPIEDIASVQYVCTELRQLVSSNELWKVKFNQKLALGEGAVLPGKKTPASRKPEHRLPRRVARIPRRNAFMSHSRLRGR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2304252 2305622 - CmoCh04G004630.1 Cmo04g00463 379438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00463 456 MobiDBLite consensus disorder prediction 97 116 - -
Cmo04g00463 456 MobiDBLite consensus disorder prediction 85 125 - -
Cmo04g00463 456 Pfam F-box domain 364 404 IPR001810 GO:0005515
Cmo04g00463 456 SUPERFAMILY F-box domain 356 410 IPR036047 GO:0005515
Cmo04g00463 456 PANTHER F-BOX PROTEIN SKIP22 1 412 - -
Cmo04g00463 456 ProSiteProfiles F-box domain profile. 360 406 IPR001810 GO:0005515
Cmo04g00463 456 Gene3D - 363 454 - -
Cmo04g00463 456 Gene3D - 182 362 - -
Cmo04g00463 456 SMART fbox_2 366 406 IPR001810 GO:0005515
Cmo04g00463 456 PANTHER F-BOX PROTEIN SKIP22 1 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00463 K10293 FBXO7; F-box protein 7 - cmax:111489505 830.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00463 Cmo16g00325 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00325 Cmo-Chr16:1485072 Cmo04g00463 Cmo-Chr4:2304252 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g767 Blo02g00918 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00962 Cam10g0985 Cec10g1016 . Clacu10g1007 Cmu10g1790 Cre10g1163 . . Cone3ag1045 Cone10ag1061 . . . . . . . . . . . . Sed07g1148 Cmo04g00463 Cmo16g00325 . . . . Cpe14g00254 . Bhi11g01103 Tan01g0606 Cmetu07g0362 . . Mch10g0409 . . . . . . . . Lsi03g01007 . . Cme07g02210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009275 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00463 Cmo_Chr04 FPKM 16.131483 16.151266 13.233642 12.729471 31.290146 33.445911 26.234171 11.688426 11.077271 10.63946