Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00473 ATGGGTGCTCCGAAGCAGAAGTGGACTAACCAAGAAGAAACAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGCGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCGAGGTTGGCACTTAAGAGATCGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCCCAAGGCATTGCTGTCCAAAGTGAAGATGAATTTCCGGAAGCCAAGACTGTTTCCCTTTCCTTGGACATCAAGCAGATAGCTGGTCCAAAGCAATCAAATGTAAGAAAAGAAGAGGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCAATGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGCGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGGTCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCATCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGACTCGCTTCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAGATAACAGAGATGAAATGTGTACACTTGCAAAAGCTCAAATGGATCTTGAATTGGCGAAGATGAGGACCATGACATCCCAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGGTAAAACTGCATAATATTTACCGTTGA 1008 44.15 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRSHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDIKQIAGPKQSNVRKEEEEEDEEEEEEEEEEEKEVERTERDAMYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEGQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLASTVSSCERRGSMLLLDDQHRASMRDNRDEMCTLAKAQMDLELAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAAAAQSFAEAAMKTLKGRNLPKMVKLHNIYR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2362687 2367413 + CmoCh04G004730.1 Cmo04g00473 379448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00473 335 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cmo04g00473 335 Coils Coil 117 149 - -
Cmo04g00473 335 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 153 221 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 SUPERFAMILY Homeodomain-like 2 72 IPR009057 -
Cmo04g00473 335 SMART sant 4 59 IPR001005 -
Cmo04g00473 335 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmo04g00473 335 PANTHER SINGLE MYB HISTONE 4 1 327 IPR044597 GO:0003691
Cmo04g00473 335 Pfam linker histone H1 and H5 family 158 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 SMART h15plus2 155 216 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 Coils Coil 274 311 - -
Cmo04g00473 335 Gene3D - 153 228 IPR036388 -
Cmo04g00473 335 MobiDBLite consensus disorder prediction 125 143 - -
Cmo04g00473 335 MobiDBLite consensus disorder prediction 116 148 - -
Cmo04g00473 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cmo04g00473 335 Gene3D - 8 88 - -
Cmo04g00473 335 SUPERFAMILY Winged helix DNA-binding domain 154 223 IPR036390 -
Cmo04g00473 335 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 327 - -
Cmo04g00473 335 CDD SANT_TRF 6 56 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00473 Cmo16g00332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00951 Cmo-Chr3:7151498 Cmo04g00473 Cmo-Chr4:2362687 3.94E-73 dispersed
Cmo04g00473 Cmo-Chr4:2362687 Cmo14g01287 Cmo-Chr14:10777356 7.32E-35 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo04g00473 Cmo-Chr4:2362687 1.44E-151 wgd
Cmo04g00473 Cmo-Chr4:2362687 Cmo07g00654 Cmo-Chr7:2944985 4.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9530 PF00538 Linker_histone 9.00E-08 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00473 K09422 - csv:101218411 417.542