Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00473 ATGGGTGCTCCGAAGCAGAAGTGGACTAACCAAGAAGAAACAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGCGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCGAGGTTGGCACTTAAGAGATCGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCCCAAGGCATTGCTGTCCAAAGTGAAGATGAATTTCCGGAAGCCAAGACTGTTTCCCTTTCCTTGGACATCAAGCAGATAGCTGGTCCAAAGCAATCAAATGTAAGAAAAGAAGAGGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCAATGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGCGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGGTCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCATCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGACTCGCTTCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAGATAACAGAGATGAAATGTGTACACTTGCAAAAGCTCAAATGGATCTTGAATTGGCGAAGATGAGGACCATGACATCCCAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGGTAAAACTGCATAATATTTACCGTTGA 1008 44.15 MGAPKQKWTNQEETALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRSHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDIKQIAGPKQSNVRKEEEEEDEEEEEEEEEEEKEVERTERDAMYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEGQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLASTVSSCERRGSMLLLDDQHRASMRDNRDEMCTLAKAQMDLELAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAAAAQSFAEAAMKTLKGRNLPKMVKLHNIYR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2362687 2367413 + CmoCh04G004730.1 Cmo04g00473 379448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00473 335 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cmo04g00473 335 Coils Coil 117 149 - -
Cmo04g00473 335 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 153 221 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 SUPERFAMILY Homeodomain-like 2 72 IPR009057 -
Cmo04g00473 335 SMART sant 4 59 IPR001005 -
Cmo04g00473 335 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmo04g00473 335 PANTHER SINGLE MYB HISTONE 4 1 327 IPR044597 GO:0003691
Cmo04g00473 335 Pfam linker histone H1 and H5 family 158 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 SMART h15plus2 155 216 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo04g00473 335 Coils Coil 274 311 - -
Cmo04g00473 335 Gene3D - 153 228 IPR036388 -
Cmo04g00473 335 MobiDBLite consensus disorder prediction 125 143 - -
Cmo04g00473 335 MobiDBLite consensus disorder prediction 116 148 - -
Cmo04g00473 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cmo04g00473 335 Gene3D - 8 88 - -
Cmo04g00473 335 SUPERFAMILY Winged helix DNA-binding domain 154 223 IPR036390 -
Cmo04g00473 335 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 327 - -
Cmo04g00473 335 CDD SANT_TRF 6 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00473 K09422 MYBP; transcription factor MYB, plant - csv:101218411 417.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00473 Cmo16g00332 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00951 Cmo-Chr3:7151498 Cmo04g00473 Cmo-Chr4:2362687 3.94E-73 dispersed
Cmo04g00473 Cmo-Chr4:2362687 Cmo14g01287 Cmo-Chr14:10777356 7.32E-35 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo04g00473 Cmo-Chr4:2362687 1.44E-151 wgd
Cmo04g00473 Cmo-Chr4:2362687 Cmo07g00654 Cmo-Chr7:2944985 4.20E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00332 CST 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.6e-75 279.6
Cmo04g00473 CST 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 55.4 4.5e-67 252.3
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 3.0e-63 239.6
Cmo07g00654 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.6 5.3e-60 228.8
Cmo07g00654 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 53.7 2.6e-67 253.1
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 3.2e-65 246.1
Cmo07g00654 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 3.7e-58 222.6
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Cmo01g00058 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 1.4e-70 263.8
Cmo14g01287 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 7.9e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9530 PF00538 Linker_histone 9.00E-08 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00473 Cmo_Chr04 FPKM 13.286872 11.929476 10.288832 9.854027 10.597672 9.322061 11.960086 5.593613 7.122906 7.93342