Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00475 ATGAACATTTTCAGAGCTCTCACCCTCTTTTTTCTTCCCTTCATTTTGATATTTTCAGGGAAGTTCATAACCATACGAGGTTTCTCTTATGACTATTCTGCAACAGCCGAGTGTCTAGCTAAGCCATGGAGGGTTCATCATGGAGGAGGGATCATAGTGAATCCAGAGTTCAACAATGGAACTGAAGGATGGAAAGTATATGGAGGAGGAGAAATAAAGCTAGGGTGGTTGAAACAAGGCAACGACACCAATACCTTCATTGTAGCTCACAATAGGACTCAACCAAGGGATAGTCTCTATCAGTTGGTTCATCTCCAATATGAAAAGCTCTATAGTTTCTCGGCTTGGGTTCGACTAAGTGAAGAGAACGCACCTGTGGCTGTTCTATACAGAAATAGTGAAGGGGGTGAGATTCGTAATGTTGGTGAAACCATAGCCCAGCAGGGCTGCTGGAGTTTGTTCAAAGGTGGCTTTGTCTCTAATTTTACAGGCCAGGCTGAGCTTTTTTTTGAGAGTACAAATACGACAGCAGATATTTGGATTGATAATGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCAAGCAGACAACTGTACACTAGCAGGTGCAAAAGTCTTCCTCGACCAGAAAAAAAGAAACTTCCCATTTGGGGCAGGAATGAACAGCCATATCCTTTCCAGCAAAAGATACCAACAATGGTTTGCATCAAGATTTGATTATGCCACTTTCACCAATGAACTTAAGTGGTATAGCAATGAGAAAGTACAAGGCCAAGAAAACTACACCATCCCTGATGCAATGCTTCAGTTTGCCCGTCGTAATGGTATTAAAGTCAGAGGACACAACATTTTCTGGGCCGATCCCATTTATCAGCCAGAATGGGTCAAGTCACTCAGCCCTAAAGATTTGATGAAAGCAGCCAATAGAAGAATCAAGTCCGTGCTTAAGAGATACTCCGGAGAGTTTATTCACTGGGATGTCATGAACGAAAACGTGCACCACAGACTCTTCGAGGACAAACTTGGTGAAAATGCCTCTGCAATGTACTTCAAGATAGCACGTAAACTAGATAAGAAACCGCTTCTTTTCCTCAACGAATTCAATGCCATGGAACATGATTACGAAAAGAAAGCAACCCCAGCTAACTACAGAAAGAGACTCTTCCAAATCCTATCGTATCCCGGGAACCAAAATATTCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGATCCACCAAACCTACCATACATGAGATCCGCTTTGGACTATCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTATTATAAAGAAGGCCCAAATCAGGCACAATTCTATGAAGAAGTTTTAAGAGAAGGATACGCACATCCTGCCGTGAAGGGGATAATCACATTTGCAGGCCCATTATCGGCGAACTTCGCTATCTTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCAGGAGACGTTGTCGATAAGCTTCTGGCTGAATGGAAATCGCCCTGTTCGGAAATGACAGCCGACGGTGAAGGTTTGGTTGAAGCTTTGTTGTTCCATGGAGATTACAATGTAACAGTGCAACACCCTGTAACCAAATCCGCCATTTCTGTTAGCATTAGAGTGTTGGAAGATGCCGCTTGTCAGACCTTCAACGTCCAGCTCCCTGATAATTGA 1692 43.85 MNIFRALTLFFLPFILIFSGKFITIRGFSYDYSATAECLAKPWRVHHGGGIIVNPEFNNGTEGWKVYGGGEIKLGWLKQGNDTNTFIVAHNRTQPRDSLYQLVHLQYEKLYSFSAWVRLSEENAPVAVLYRNSEGGEIRNVGETIAQQGCWSLFKGGFVSNFTGQAELFFESTNTTADIWIDNVRKSKVRLQITQADNCTLAGAKVFLDQKKRNFPFGAGMNSHILSSKRYQQWFASRFDYATFTNELKWYSNEKVQGQENYTIPDAMLQFARRNGIKVRGHNIFWADPIYQPEWVKSLSPKDLMKAANRRIKSVLKRYSGEFIHWDVMNENVHHRLFEDKLGENASAMYFKIARKLDKKPLLFLNEFNAMEHDYEKKATPANYRKRLFQILSYPGNQNIPAGIGLQGNFGPDPPNLPYMRSALDYLGSTGYPIWITEVYYKEGPNQAQFYEEVLREGYAHPAVKGIITFAGPLSANFAILPLVDLNFKNTPAGDVVDKLLAEWKSPCSEMTADGEGLVEALLFHGDYNVTVQHPVTKSAISVSIRVLEDAACQTFNVQLPDN 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2374692 2377864 - CmoCh04G004750.1 Cmo04g00475 379450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00475 563 Gene3D - 44 190 - -
Cmo04g00475 563 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 36 559 - -
Cmo04g00475 563 Gene3D Glycosidases 206 510 - -
Cmo04g00475 563 SUPERFAMILY (Trans)glycosidases 201 506 IPR017853 -
Cmo04g00475 563 SUPERFAMILY Galactose-binding domain-like 49 184 IPR008979 -
Cmo04g00475 563 SMART glyco_10 248 499 IPR001000 GO:0004553|GO:0005975
Cmo04g00475 563 Pfam Carbohydrate binding domain 50 173 IPR003305 GO:0016798
Cmo04g00475 563 PANTHER GLYCOSYL HYDROLASE 36 559 IPR044846 GO:0004553|GO:0005975
Cmo04g00475 563 Pfam Glycosyl hydrolase family 10 212 457 IPR001000 GO:0004553|GO:0005975
Cmo04g00475 563 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 202 500 IPR001000 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00475 - - - cmax:111482849 1087.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00475 Cmo-Chr4:2374692 Cmo04g00478 Cmo-Chr4:2384534 0 dispersed
Cmo04g00475 Cmo-Chr4:2374692 Cmo04g00476 Cmo-Chr4:2379528 0 tandem
Cmo19g00563 Cmo-Chr19:6449254 Cmo04g00475 Cmo-Chr4:2374692 3.27E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00475 Cmo_Chr04 FPKM 36.618893 38.261387 25.58555 26.609812 47.202942 48.726021 44.69595 29.820736 32.567024 32.043751