Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00476 ATGAAACAGTGTCTAGCGAAGCCAAGGAGGGTTCATCATGGAGGAGGGATCATAGTGAATCCAGAGTTCAACAATGGAATTGAAGGGTGGAAAATGTTTGGAGGAGGTGAAATAAAGCAAGGGTCATTGAAACAAGACGACGATATCAATACGTTCATTGTAGCTCACAAGAGGGCTCACCCAAGGGATAGTCTCTATCAGTTGGTTCATCTCCGACATGGAAAGCACTATAGTTTTTCTGCTTGGGTTCGACTAAGTGAAGGAAGCGCACCTGTCGCTGTTCTATTCAGAAACAGTAAAGATGGTCAGATTCTTCATGGTGGTGAAACCATAGCCAAGCAGGGCTGCTGGAGTTTGCTCAAAGGTGGCATTGTCTCTGATTTCACAGGCCATGCGGAGAGTGAAAATACATCAGCAGAAATTTGGATCGATAATGTCTCACTGCAACCATTTACAAAGGAGCAATGGCGGTCCCACCAAGACAGAAGCATTAACAAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCGAGCAGACAACAGTAAACTAGCAGGTGCAAAAGTCTTCCTCGACCAGAAAAAACCAAACTTCCCATTTGGAGCAGGAATGAACTACCACATTCTCTCCAGCAAAGAATACCAAGATTGGTTTGCATCAAGATTTTCTTATGCCACTTTTACAAATGAACTTAAGTGGTATAGCACTGAGAGAGAACGAGGCAAAGAGAACTACACCATCCCTGATGCGATGCTTGAGTTTGCCAATCAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGCCAATCCCAAGTTTCAGCCACAATGGGTCAAGTCACTCTCCCCTGCAGATTTGAAGATAGCAGCAGAAAAAAGAATCAACTCCGTGGTTAAGAGATATTCTGGTAAGTTTATCCATTGGGACGTCATGAATGAAAATGTACACTTCAGATACTTTGAGGACAAACTCGGTGAAAATGCCTCAGCAGAGTACTTCAACACAGCACATAAACTTGACAGTAAGACACTTCTTTTCGTGAATGAATACAATACCATGGAACGTGGTAATAAAACGACAGCAACCCCGGCTAACGTAAGAAAGAAACTCTTCCAAATCCTATCGTATCCCGGGAACAAAAATATTCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGATCCGCCAAACCTACCATACATGAGATCCGCATTGGACTATCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTTATCGCAAAACTCCAAATCAGGCACAATACTATGAGGAAGTTCTAAGAGAAGGATACGCACATCCTGCAGTGAAGGGCATAATCACATTTGCAGGCCCATTATCGGCGAATTTCACTACCCTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCAGGAGACGTTGTCGATAAGCTTCTGGCTGAATGGAAATCGCCCAACTTGGAAATTACAGACGATGGTGAAGGTTTTGTTGAAGCTTTGTTGTTCCATGGAGACTACAATGTAACAGTGCAGCACCCTGGAACCAAATCCGCCACTTCTGTTAGCATTAGAGTGTCTGAAGATGCCGCTTATCAGACCTTCAATGTCCAACTCAGCAATAATTGA 1641 44.12 MKQCLAKPRRVHHGGGIIVNPEFNNGIEGWKMFGGGEIKQGSLKQDDDINTFIVAHKRAHPRDSLYQLVHLRHGKHYSFSAWVRLSEGSAPVAVLFRNSKDGQILHGGETIAKQGCWSLLKGGIVSDFTGHAESENTSAEIWIDNVSLQPFTKEQWRSHQDRSINKVRKSKVRLQITRADNSKLAGAKVFLDQKKPNFPFGAGMNYHILSSKEYQDWFASRFSYATFTNELKWYSTERERGKENYTIPDAMLEFANQHGISVRGHNIFWANPKFQPQWVKSLSPADLKIAAEKRINSVVKRYSGKFIHWDVMNENVHFRYFEDKLGENASAEYFNTAHKLDSKTLLFVNEYNTMERGNKTTATPANVRKKLFQILSYPGNKNIPAGIGLQGNFGPDPPNLPYMRSALDYLGSTGYPIWITEVFYRKTPNQAQYYEEVLREGYAHPAVKGIITFAGPLSANFTTLPLVDLNFKNTPAGDVVDKLLAEWKSPNLEITDDGEGFVEALLFHGDYNVTVQHPGTKSATSVSIRVSEDAAYQTFNVQLSNN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2379528 2382135 - CmoCh04G004760.1 Cmo04g00476 379451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00476 546 SUPERFAMILY (Trans)glycosidases 184 490 IPR017853 -
Cmo04g00476 546 Gene3D Glycosidases 189 492 - -
Cmo04g00476 546 Pfam Glycosyl hydrolase family 10 195 450 IPR001000 GO:0004553|GO:0005975
Cmo04g00476 546 SUPERFAMILY Galactose-binding domain-like 15 150 IPR008979 -
Cmo04g00476 546 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 185 483 IPR001000 GO:0004553|GO:0005975
Cmo04g00476 546 Pfam Carbohydrate binding domain 16 96 IPR003305 GO:0016798
Cmo04g00476 546 Gene3D - 7 151 - -
Cmo04g00476 546 PANTHER GLYCOSYL HYDROLASE 2 542 IPR044846 GO:0004553|GO:0005975
Cmo04g00476 546 SMART glyco_10 231 482 IPR001000 GO:0004553|GO:0005975
Cmo04g00476 546 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 2 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00476 - - - cmax:111472552 1040.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00476 Cmo19g00563 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00476 Cmo-Chr4:2379528 Cmo19g00563 Cmo-Chr19:6449254 8.41E-168 dispersed
Cmo04g00476 Cmo-Chr4:2379528 Cmo04g00478 Cmo-Chr4:2384534 0 proximal
Cmo04g00475 Cmo-Chr4:2374692 Cmo04g00476 Cmo-Chr4:2379528 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g711 . . . . . . . . Cmo19g00563 . . . . . . . Cpe15g00436 . . . . . . . Cla02g00685 Cam02g0718 Cec02g0731 Cco02g0753 Clacu02g0728 Cmu02g0726 Cre02g1037 . . . Cone10ag1048 Lsi03g00581 Csa07g00681 . Cme01g00123 . . . . . . . . . Cmo04g00476 . . Cma19g00549 . . . Cpe01g00398 . . . . . . . . . . . . . . . . Chy01g00133 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00476 Cmo_Chr04 FPKM 13.788089 16.565586 3.595117 3.503547 118.945381 118.155365 130.25882 3.252771 3.486432 2.980731