Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00478 ATGAACATTTCCAGAGCTCTCAGCCTTTTTTTTCTTCCCTTCATTTTGATATTTTCAGGAAAGTTCATAACCATCCGAAGTTTTTCCTATGATTATTATGCAACAACTGAGTGTCTGGTGAAGCCAAGAGGAGTTCGTAATGGAGGAGGGATCATATTGAATCCAGAGTTCAACAATGGAATTGAAGGGTGGAAAGTGTTTGGAGGAGGCGAAATAAAGCAAGGGTCTTTGAAACAAGACAACCACATCAATAGCTTCATTGTAGCTCACAAGAGGGCTCACCCAAGGGATAGTCTCTATCAGTTGGTTCATCTCCAACATGGAAAGCTCTATAGTTTCTCTGCTTGGGTTCGACTAAGTGAAGGAAGCGCACCTGTCGCTGTTCTATTCAGAAATAGTAAAGGTGGTCGGATTCTTCATGGTGGTGAAACCATAGCCAAGCAGGGCTGCTGGAGTTTGCTCAAAGGTGGCATTGTCTCTGATTTCACAGGCCATGCGGAGGTCTTTTTTGAGAGTGAAAATACATCAGCAGAAATTTGGCTCGATAATGTCTCACTGCAACCATTTACAAAGGAGCAATGGCGATCCCACCAAGACAGAAGCATTAACGAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACCCAAGCAGACAACAGTAAACTAGCAGGTGCAAAAGTCTTCGTCGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACCACCACATTCTCTCCAGCAAAGAATACCAAGATTGGTTTGCATCAAGATTTTCTTGTGCCACTTTTACAAATGAACTTAAGTGGTATAGCACTGAGATAGAACCAGGCAAAGAGAACTACACCATCCCTGATGCGATGCTTGAGTTTGCCAATCAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGACAATCCCAAGTTTCAGCCACAATGGGTCAAGTCACTCTCCCCTGCAGATTTGAAGATAGCAGCAGAAAAAAGAATCAACTCCGTGGTTAAGAGATATTCTGGAAAGTTTATCCATTGGGACGTCATGAATGAAAATGTACACTTCAGATACTTTGAGGACAAACTCGGTGAAAATGCCTCAGCAGAGTACTACAACACAGCACATAAACTTGACAGTAAGACACTTCTTTTCGTGAATGAATACAATACCATGGAACATGCTAGTGAAACGACAGCAAGCCCGGCTAACGTAAGAAAGAAACTCTTCCAAATCCTATCGTATCCCGGGAACGAAAATATTCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGATCCGCCAAATCTACCATACATGAGATCCGCATTGGACTATCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTTATTACAAAACTCCAAATCAGGCACAATACTATGAGGAAGTTCTAAGAGAAGGATACGCACATCCTGCAGTAAAGGGCATAATCACATTTGCAGGCCCATTATCGGCGAATTTCACGACCCTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCAGGAGACGTTGTCGATAAGCTTCTGGCTGAATGGAAATCGCCCAGCTTGGAAATTACAGCCGATGGTGAAGGTTTTGTTGAAGCTTCGTTGTTCCATGGAGATTACAATGTAACAGTGCAGCACCCTGGAACCAAATCCGCCACCTCTGTTAGCATTAGAGTGTCTGAAGATGCCGCTTATCAGACCTTCAATGTCCAACTCAGCGATAATTGA 1755 43.82 MNISRALSLFFLPFILIFSGKFITIRSFSYDYYATTECLVKPRGVRNGGGIILNPEFNNGIEGWKVFGGGEIKQGSLKQDNHINSFIVAHKRAHPRDSLYQLVHLQHGKLYSFSAWVRLSEGSAPVAVLFRNSKGGRILHGGETIAKQGCWSLLKGGIVSDFTGHAEVFFESENTSAEIWLDNVSLQPFTKEQWRSHQDRSINEVRKSKVRLQITQADNSKLAGAKVFVDQKKPNFPFGAGMNHHILSSKEYQDWFASRFSCATFTNELKWYSTEIEPGKENYTIPDAMLEFANQHGISVRGHNIFWDNPKFQPQWVKSLSPADLKIAAEKRINSVVKRYSGKFIHWDVMNENVHFRYFEDKLGENASAEYYNTAHKLDSKTLLFVNEYNTMEHASETTASPANVRKKLFQILSYPGNENIPAGIGLQGNFGPDPPNLPYMRSALDYLGSTGYPIWITEVFYYKTPNQAQYYEEVLREGYAHPAVKGIITFAGPLSANFTTLPLVDLNFKNTPAGDVVDKLLAEWKSPSLEITADGEGFVEASLFHGDYNVTVQHPGTKSATSVSIRVSEDAAYQTFNVQLSDN 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2384534 2387358 - CmoCh04G004780.1 Cmo04g00478 379453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00478 584 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 230 521 IPR001000 GO:0004553|GO:0005975
Cmo04g00478 584 Gene3D Glycosidases 225 530 - -
Cmo04g00478 584 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 36 580 - -
Cmo04g00478 584 Pfam Glycosyl hydrolase family 10 233 488 IPR001000 GO:0004553|GO:0005975
Cmo04g00478 584 PANTHER GLYCOSYL HYDROLASE 36 580 IPR044846 GO:0004553|GO:0005975
Cmo04g00478 584 Pfam Carbohydrate binding domain 50 128 IPR003305 GO:0016798
Cmo04g00478 584 SUPERFAMILY (Trans)glycosidases 222 527 IPR017853 -
Cmo04g00478 584 SMART glyco_10 269 520 IPR001000 GO:0004553|GO:0005975
Cmo04g00478 584 SUPERFAMILY Galactose-binding domain-like 49 188 IPR008979 -
Cmo04g00478 584 Gene3D - 42 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00478 - - - cmax:111472552 1093.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00475 Cmo-Chr4:2374692 Cmo04g00478 Cmo-Chr4:2384534 0 dispersed
Cmo04g00478 Cmo-Chr4:2384534 Cmo19g00563 Cmo-Chr19:6449254 1.46E-174 dispersed
Cmo04g00476 Cmo-Chr4:2379528 Cmo04g00478 Cmo-Chr4:2384534 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1030 Cone10ag1047 Lsi03g00578 . . . . . . . . . . . Sed07g1258 Cmo04g00478 . . . . . . Cpe01g00400 Bhi11g01130 Tan01g0624 Cmetu07g1354 . Hepe07g0408 Mch10g0421 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00478 Cmo_Chr04 FPKM 0.945525 0.777449 0.0 0.395375 149.252533 127.28862 141.835724 0.277853 0.0 0.0