Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00480 ATGGTTTCGACTGGGGGAATTTCGTTTCCGGGATGTGTGCCTCCGCCGCTCCGCCAGAAATCATTCTCGCCGCCATCGGCGTTTGGGTTTGCAAGGCTTTCCAATGGGATTAGCTTCAAATCAACGGTGGTTGTTTGTGATTGGGCTGAGAAAAAGGGTTCGAGGGCGGTGATTGTTAATGGGAAGGTCGATGGTTTGGGTAAGAGTGAATGCGAGATTGATTTAGATGCTACCTTGGGCAATGGACATGCTGGAAACTCTGGGAAAAATGCTGGAGTGTTGTCCACAGTAGGAAACTCTACCAATATCAAGTGGCATGAATGTTCAATTGGAAATGTTGAAAGACAGAGCCTTCTCAACCAGAAAGGGTGTGTCATATGGATCACAGGGCTCAGTGGCTCAGGGAAGAGCTCTGTGGCTTGTGCCTTGACTAAAAGCTTATACAAAATGGGAAAGTTGGCTTATATTCTTGATGGGGACAATGTTAGGCATGGATTGAATCGTGACCTTGGCTTTAAAGCCGAAGATCGTGCGGAGAACATAAGGAGGGTTGGTGAGGTTGCGAAACTGTTTGCAGACGCTGGAGTTATTTGTATTGCTAGTTTGATATCTCCATATCGAAGGGATCGAGATGCTTGTCGTGCCATTTTACCTGATGGATACTTTATTGAGGTGTTCATGGATGTTCCTCTTGAAATTTGTGAAGCACGAGATACGAAGGGACTGTATAAGCTTGCACGGGCGGGGAAGATCAAAGGCTTTACCGGTATTGATGATCCATATGAAGTACCATTGAATTGTGAGATTGTACTGAAACACAATGGAGGTTCCCCATGCGACATGGCAGATAAAGTGATGAGTTTCCTTGAGCAGAAGGGCTTCCTGAAGGCTTAA 894 45.97 MVSTGGISFPGCVPPPLRQKSFSPPSAFGFARLSNGISFKSTVVVCDWAEKKGSRAVIVNGKVDGLGKSECEIDLDATLGNGHAGNSGKNAGVLSTVGNSTNIKWHECSIGNVERQSLLNQKGCVIWITGLSGSGKSSVACALTKSLYKMGKLAYILDGDNVRHGLNRDLGFKAEDRAENIRRVGEVAKLFADAGVICIASLISPYRRDRDACRAILPDGYFIEVFMDVPLEICEARDTKGLYKLARAGKIKGFTGIDDPYEVPLNCEIVLKHNGGSPCDMADKVMSFLEQKGFLKA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2388661 2391863 - CmoCh04G004800.1 Cmo04g00480 379455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00480 297 Hamap Adenylyl-sulfate kinase [cysC]. 121 293 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cmo04g00480 297 Pfam Adenylylsulphate kinase 122 274 - -
Cmo04g00480 297 PANTHER ADENYLYL-SULFATE KINASE 1, CHLOROPLASTIC 50 297 - -
Cmo04g00480 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 292 IPR027417 -
Cmo04g00480 297 CDD APSK 125 272 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cmo04g00480 297 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 50 297 - -
Cmo04g00480 297 TIGRFAM apsK: adenylyl-sulfate kinase 105 287 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cmo04g00480 297 Gene3D - 95 297 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00480 K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] - csv:101213954 498.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00480 Cmo16g00334 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01146 Cmo-Chr14:8592243 Cmo04g00480 Cmo-Chr4:2388661 5.10E-111 transposed
Cmo16g00334 Cmo-Chr16:1547103 Cmo04g00480 Cmo-Chr4:2388661 3.28E-176 wgd
Cmo04g00480 Cmo-Chr4:2388661 Cmo07g00659 Cmo-Chr7:2962357 1.13E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g709 Blo02g00927 Blo03g00071 Bda06g01200 . Bpe07g00277 . Bma05g00649 Bma12g00284 . . . . . . . . . . . . . . . . Cla10g00977 Cam10g1000 Cec10g1030 Cco10g0993 Clacu10g1021 Cmu10g1804 Cre10g1178 . . Cone3ag1029 Cone10ag1045 . . . . . . . . . Bpe05g00469 . . Sed07g1259 Cmo04g00480 Cmo16g00334 . . . . Cpe14g00261 Cpe01g00401 Bhi11g01131 Tan01g0626 Cmetu07g0597 . Hepe07g0409 Mch10g0422 . . . . . . . . Lsi03g01016 . . Cme07g02193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000484 3 6 4 4 2 2 4 3 2 1 2 2 2 3 3 4 2 4 4 2 3 2 3 3 3 2 3 19 14 3 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00480 Cmo_Chr04 FPKM 19.216387 21.816725 61.64999 62.820698 51.006664 48.848976 54.989574 101.886147 102.675171 114.791725