Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00483 ATGGAGCCTATAGCAGAAAGAGAATGGATCTCTGAGGAATCTGATTTCATGGCTAATTTGCTCAGTAATTACTGTCTCCCAAATGAGCTAAGTTCAGATTTGAGCTTGGAAATCCCTTGTGCTTATTGGGAATCCAATGAACCACCATCACTGTCCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATTCCCTCCCTCTTTGGCTGCCTAATGGTGCTTCTTTGTCCTTGGATTTCTCGATGGAGGACGATCGCTTGGACGACAACGGTTCGAGTCGAAAAACAAGGCAATGTAGGCTGCAACACTCCCTTGCTGACCCTGCTGCTGCTGCTGTTGCTGTCAATGGGAAAAAAAGGAAAGCTGAGATACACGAGAAAGTTGCATCGATGTCGGTCGTCGAGAACTCGAAGAAGAGGAACGCAAGGCCACCGAAGATCATGAAGCTTGGTTCGGCTAGCTGCAATGATGAGGATCACATTGGTCAGTGTACAAGCAGCTTTAGCTCTGAGGAGTCTCAAGAAATCAATGGTGGAATTAGTTCAAGTTCAAGCTCAAAAGGGTCTGCCTCTTTGACCTCAAATGGGAAGCCAAGAGCTAGTAGAGGCTCAGCCACTGACCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAAGATCTTACAAAGCCTCGTCCCCAATGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTGAATATGTAAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTACAATGGAATGGATATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAGTAG 882 44.67 MEPIAEREWISEESDFMANLLSNYCLPNELSSDLSLEIPCAYWESNEPPSLSMAAMDEPSYYSSDSLPLWLPNGASLSLDFSMEDDRLDDNGSSRKTRQCRLQHSLADPAAAAVAVNGKKRKAEIHEKVASMSVVENSKKRNARPPKIMKLGSASCNDEDHIGQCTSSFSSEESQEINGGISSSSSSKGSASLTSNGKPRASRGSATDPQSLYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2409281 2410415 - CmoCh04G004830.1 Cmo04g00483 379458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00483 293 Gene3D - 207 263 IPR036638 GO:0046983
Cmo04g00483 293 SMART finulus 211 260 IPR011598 GO:0046983
Cmo04g00483 293 MobiDBLite consensus disorder prediction 133 215 - -
Cmo04g00483 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Cmo04g00483 293 MobiDBLite consensus disorder prediction 159 209 - -
Cmo04g00483 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 122 287 - -
Cmo04g00483 293 Pfam Helix-loop-helix DNA-binding domain 215 255 IPR011598 GO:0046983
Cmo04g00483 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 271 IPR036638 GO:0046983
Cmo04g00483 293 CDD bHLH_AtIND_like 206 268 - -
Cmo04g00483 293 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 122 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00483 Cmo-Chr4:2409281 Cmo15g00764 Cmo-Chr15:3751026 1.23E-26 dispersed
Cmo11g01419 Cmo-Chr11:9982115 Cmo04g00483 Cmo-Chr4:2409281 1.50E-52 wgd
Cmo16g00342 Cmo-Chr16:1580268 Cmo04g00483 Cmo-Chr4:2409281 8.27E-95 wgd
Cmo04g00483 Cmo-Chr4:2409281 Cmo05g00146 Cmo-Chr5:642861 4.04E-52 wgd
Cmo04g00483 Cmo-Chr4:2409281 Cmo09g00277 Cmo-Chr9:1225906 7.68E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9531 PF00010 HLH 6.60E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00483 - - mcha:111017743 362.844