Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00487 ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTCCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGATCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCACAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAATTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGTGTCTTGGTCTCTTAGTTTGAGGAAAGATATGAGGGACAAAAAGGATACATGCGAGATAATATTGCCATCTGCACACACAACACAAGTTATTACATATAGCCATTGTCCATGCTTTATCACAAGCTCAAGGATCCGTTTGTCTAAGTTAAAGACAAAATTAATCATAGCACTCAAAATGAAGCTTTACATCTTTGAAAAGGCTAATAGAGTGGAACAAGAGACCTACACATGGTTTAAAAAGGATACCCTACCAATTCTTTTACATCCTTCTTCTGCTGCCTCGTCGGGTGATCTGGTTTCAAAGAGAGCTTGCAAGGCGAACTCAGGCATGTTCGGAAATCTGAGCGGGAAAAAGCTCTGCGGATGTTATCAGATACGCTTAATCGGAAATGGCTTTATCTCGGATTCAGCCATTGTTGAAATTACAGCTCTGAAAATGATTCCGAGGAAAGATAGTTCTCGTATAGACACTTCAGAGCTGAAAGCGATGATCTACCAAAAGCTTGGACATCAGAGGTCGGAGAAATACTTTGATCAGCTTAAAAACTTGTTGAGTTTAAAGATCAACAAGAGGGAATTCGACAAGTTTTGTATTCAGATCATTGGGAGGGAGGTTATACCTCTTCATAATCGGCTTATCAGAGCGATTCTTCGAAATGCCTGTGTTGCTAAAATTCCCCCTGTTCTTAGCAGTTCTAGGAAAGTAGGAGCCAATCTCAGTGTCAAGGTTGTGCATGGATATCAGAAGAGTTGTCTTCAATCGCTTAATGGAGATGCATTTCTCTCTTCCCCTCGTAAGGGCAGGTCTCCGGTTAGTAGAGACCGCAAGATTCGAGATCGCCCGAGTCCTTTAGGACCATGTGGGAAGCCTCAGAATATTGAACTTGAAGAACTTGCTTTCAAGGCACAAGAACAGCAGAGTGCAACTGAGTTGCATTCGCTTGGTAGTCGTCCTCCTGTCGAAATGGCATCTGTAGAAGACGGTGAAGAGGTCGAGCAGATGGCTGCGAGTCCAGGAGTTCAGAGCAGAAGCCCGGTTACTGCTCCATTTGGTATATCCATGAACTTCATTGGATCTGGTAAAACTCTGTCTAATGTAACTGTAGGAAGAAACTACCGTTTAACAACATGTCAAAATGGTGGCGAGCTACCCGACACAAGGTTGCTAAGAACTCATTTGAAGCAGAAGTTGGAAACGGAGCAGATTGATATATCTGTGGATGGTGTAAACCTTCTCAACAATGCGCTTGATGTTTATTTAAAGAGGTTAATCGAGCCATGTTTGAATTTCTCTCGATCAAGGTGCGAACGAGAGGGGAATCAACCGATCACTGACTCAAGAACCAGATCCCTGGAACAACATTGGCATAGATCTCAACGGTTGAGCAACGCATCCTTGTTGGACTTCAGTGTTGCAATGCAACTGAATCCTGAATTACTCGGAAAAGACCGAACAATACAGCTCGAGAAAATTAGTTTACGAGCTTTAGAAGAGTGA 1860 43.82 MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCDRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEVSWSLSLRKDMRDKKDTCEIILPSAHTTQVITYSHCPCFITSSRIRLSKLKTKLIIALKMKLYIFEKANRVEQETYTWFKKDTLPILLHPSSAASSGDLVSKRACKANSGMFGNLSGKKLCGCYQIRLIGNGFISDSAIVEITALKMIPRKDSSRIDTSELKAMIYQKLGHQRSEKYFDQLKNLLSLKINKREFDKFCIQIIGREVIPLHNRLIRAILRNACVAKIPPVLSSSRKVGANLSVKVVHGYQKSCLQSLNGDAFLSSPRKGRSPVSRDRKIRDRPSPLGPCGKPQNIELEELAFKAQEQQSATELHSLGSRPPVEMASVEDGEEVEQMAASPGVQSRSPVTAPFGISMNFIGSGKTLSNVTVGRNYRLTTCQNGGELPDTRLLRTHLKQKLETEQIDISVDGVNLLNNALDVYLKRLIEPCLNFSRSRCEREGNQPITDSRTRSLEQHWHRSQRLSNASLLDFSVAMQLNPELLGKDRTIQLEKISLRALEE 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2434249 2442517 + CmoCh04G004870.1 Cmo04g00487 379462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00487 619 MobiDBLite consensus disorder prediction 389 403 - -
Cmo04g00487 619 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 273 550 IPR024738 GO:0070461
Cmo04g00487 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 123 IPR013083 -
Cmo04g00487 619 SUPERFAMILY RING/U-box 59 107 - -
Cmo04g00487 619 Pfam Zn-finger in ubiquitin-hydrolases and other protein 60 99 IPR001607 GO:0008270
Cmo04g00487 619 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 270 619 - -
Cmo04g00487 619 MobiDBLite consensus disorder prediction 383 411 - -
Cmo04g00487 619 ProSiteProfiles Zinc finger UBP-type profile. 11 118 IPR001607 GO:0008270
Cmo04g00487 619 PANTHER TRANSCRIPTIONAL ADAPTER 1 270 619 IPR024738 GO:0070461
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00487 - - - csv:101211126 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00487 Cmo-Chr4:2434249 Cmo09g00516 Cmo-Chr9:2401116 3.40E-55 dispersed
Cmo16g00347 Cmo-Chr16:1603221 Cmo04g00487 Cmo-Chr4:2434249 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g688 . . . . . . Bma05g00656 . . . . . . . . . . . . . . . . . Cla10g01002 Cam10g1025 Cec10g1056 Cco10g1020 Clacu10g1042 Cmu10g1826 Cre10g1199 . . Cone3ag1022 . . . . . . . . . . . . . Sed13g0450 Cmo04g00487 . . . . . . Cpe01g00407 Bhi11g01143 Tan01g0644 Cmetu07g0339 . Hepe07g0422 Mch10g0452 . . . . . . . . . . . Cme07g02174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007125 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00487 Cmo_Chr04 FPKM 2.878261 3.578191 4.044533 4.710023 8.589405 9.832215 9.247168 3.25805 3.112363 3.248579