Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00492 ATGGATTCGGCTTGTTCGAACTTGGACTCAGTCTCAGCGTCGGAAGATCGAGGTAACAATTTCATTGCTATCGATTCGGAGAGTAAGAAGGACGACTCTGGCGAGACTGTTTCTGCAAGCTCAAAAAGTGGAAGAAGTAAGTTTTTGAAAGAGACAAACCAATCCACAATGCACGGTCTTAACAAGTTTACATCGCAAATCAAGAAGCCTCCTCATAGGAAGGTTTCCCCTATCAATTGGTTCCCACGCAAGAAAGTGGACTCTTACTTGAAGAGGAAGATCAAAATGCTGCAGGAAGTAGATGGCCTGAATTTAACACTAGATGAGACTCTAGGTGATTCTAATCCACATTACTCGAGAGTATTGAAAGAAAAGATGGCAGCAAGAGAGGCAGCACATAAAGCCCTGGAAGCTAGAAAAGCAGCATTGGTCGAAACCTCTTGGTGTAGAATACTCCAAGCGGCTAGAATTCAATGTAAAGAAGCTTTAGAACAGATGTACAGAGCTGAGAAAACTGCAGCTGAAGCTTTTGAAGCAGCTGCGGCTATGGGAGTGATCATGTTTGATACACCAAATTGTCCACAGAAGACTTACAATATGGAAACCTCATCTTCTAGTGGTGCTGGGTCTACAACTCACACCATCACAGCCTCTTTTGAGACAGAATTTGAGGTTGATAAGGAAGTGGCTGCAGCAGTAAAAACAGCATTGGTTAGGCTTGCAAATTGTTCTTTAAAAGAAGATGACTTCAGAGAACTGTTACGAAAAATCTCTCAGAACCCAGACAGTGATAATAATGTTGACTCATCTGAACTTTCTTCTGAATGTGAATCAGAGAATGACTTGGATCTTGATAAAGCGCCTCGAAAGGATGATTTAATAAGCTCTCACAACTTGGATTTACATTTGAAACATAAAACTTTTGAGAAGGAGACCAAGATTGAGGACTTGATGTATGAAAGGCTTAGGCGTTTGAAAGAAGATGAACTTTCTTCTCTTGCCACCATAGTAGCTACTTGTGGTTTGAATGCCGCCTTGACCGAGGTAGAAAGTGGGAAGCTTCATGATGCAGGTTCCTCTGCAGTTCAGTCCTCTGTTTCAGCTCTTAACCTTCCTTGGAGAACGCCCTCTGCTGGTTCTGGAAATTACTTCAATAATTTGCACAATGGGAGGAAGCAAGCTGAGTCAGAACTTCCCAGTCTAGACAAGTTCTTGGTAAAGCATGTGACTAAATTGGAAAGAGAGGTGCTTGAAGCAAAGAATAGCAGAAAGAACGAAGAAAAGGAATTGACCTCGGAGAACTCGGAAACAACGATGGAAGGGAAGATCGACTTAGATACGTCGCAAAACCTTCAAAAATTGAGCAGTGTTCATGACAAGAAAGTTGTTCCTAACTTGGAAATTATACTGACAAAGCCACCTTCAGAACTTGAGAAGGAAGTTAAAGAGACTAATTGCAGGGGCGGAGAAGAACTCAAGATCCATAGCAACAAGTTGCAGGCAAGGCGTAAAGAAGTTGTTTCAGCAGTTCCTAGTCTTGATAAGTATCTCGTGAAACATGTCTCACGACTAGAAAAAGAAGTACAAGAAGCAAAAAATAGAAGAAAAGTTGAGCGGAGCGAAGAAAATCGGGACATAGACACAGAGGAAAAGGAAAATGTTAGTATGCCAAAGTCTTCACTGAAGATGGGAAGGGAAAGGGAAGACAGCCTAGATAAGATCTTAGTGAAGCCGGTGCAAAGGCTGGAAAGGGAAAAGATGCTGGCCGTGTTGGCTGAAAGTAACCATGATCAGCAAAGACATAATAAGAAACAGGTGGTTAACCACCGCACACCTGATTGCCGGAGCTTGGACCAAATTTTAGTAAAGCACGTCTCAAGACTGGAGAAAGAGAAAATGAAATGCAAACCAGAGAACTTAAAGAGAAGTGAGAAAAGTAAGCATACGGAGATGAATGGAGAAGGTGGTGGGGGTTTGGGAGATATTCTGGTTAAACATAAATCAAGACTTGAACGAGAGAAGACGATGTCGTCGATGTCGTCTTCTCAGGAACCAGAAAATCAGAAGAGAAACTTTCTATCGCGTCGTGAAGCTAGGGAGAGAGATCTTCAGTCAGCCTGGGGAGGCTTAAGTTTGGGAGATTCCATGAGACCACCACATCTCTCCAAACTTGAACGAGACAAGGCTGCCTGGATCAAAGCTGAAGAGGAGGAAAGGAAGCAAGTTTTGAACCAAGTGTAG 2241 42.66 MDSACSNLDSVSASEDRGNNFIAIDSESKKDDSGETVSASSKSGRSKFLKETNQSTMHGLNKFTSQIKKPPHRKVSPINWFPRKKVDSYLKRKIKMLQEVDGLNLTLDETLGDSNPHYSRVLKEKMAAREAAHKALEARKAALVETSWCRILQAARIQCKEALEQMYRAEKTAAEAFEAAAAMGVIMFDTPNCPQKTYNMETSSSSGAGSTTHTITASFETEFEVDKEVAAAVKTALVRLANCSLKEDDFRELLRKISQNPDSDNNVDSSELSSECESENDLDLDKAPRKDDLISSHNLDLHLKHKTFEKETKIEDLMYERLRRLKEDELSSLATIVATCGLNAALTEVESGKLHDAGSSAVQSSVSALNLPWRTPSAGSGNYFNNLHNGRKQAESELPSLDKFLVKHVTKLEREVLEAKNSRKNEEKELTSENSETTMEGKIDLDTSQNLQKLSSVHDKKVVPNLEIILTKPPSELEKEVKETNCRGGEELKIHSNKLQARRKEVVSAVPSLDKYLVKHVSRLEKEVQEAKNRRKVERSEENRDIDTEEKENVSMPKSSLKMGREREDSLDKILVKPVQRLEREKMLAVLAESNHDQQRHNKKQVVNHRTPDCRSLDQILVKHVSRLEKEKMKCKPENLKRSEKSKHTEMNGEGGGGLGDILVKHKSRLEREKTMSSMSSSQEPENQKRNFLSRREARERDLQSAWGGLSLGDSMRPPHLSKLERDKAAWIKAEEEERKQVLNQV 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2450303 2453717 - CmoCh04G004920.1 Cmo04g00492 379467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00492 746 MobiDBLite consensus disorder prediction 420 435 - -
Cmo04g00492 746 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 1 742 - -
Cmo04g00492 746 Coils Coil 721 746 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 689 703 - -
Cmo04g00492 746 Coils Coil 521 541 - -
Cmo04g00492 746 Coils Coil 152 180 - -
Cmo04g00492 746 Coils Coil 409 436 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 259 273 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 257 289 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 530 567 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 37 63 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 633 651 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 22 36 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 19 78 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 633 722 - -
Cmo04g00492 746 MobiDBLite consensus disorder prediction 420 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00492 - - - mcha:111017696 1058.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00492 Cmo16g00350 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00350 Cmo-Chr16:1613368 Cmo04g00492 Cmo-Chr4:2450303 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006087 2 6 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00492 Cmo_Chr04 FPKM 19.547009 19.851444 34.340771 32.596741 27.385899 28.725811 26.90579 57.458702 59.051373 67.215302