Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00496 ATGAGCGGCGGTAGCGGAACGGAGACGGAGTTGGAGTGTACGAAATTTCGTGTTAGGATTACGCTTATGTTAATATGCATGTTCTGTTTTTCAATTACAGACCCACTAAATGTTTTAACCCTTGAACATCTTTTGGTCTTTGTTTTAAGTGGAGGATGGCTGATGGTGGTAACCATGGTGTCTCTCCTGTGCCAGATAATCAAGACTGATAAATGTCCGTGGAGAAGCTCTTTGAAGAGAGTGCTTGAGTGCAGCATCCTGCTAATGAGAATTCGAAAACGGTATCAGAAAATCTTAAAGTCTGAGCAACCTCTAGTTGAAGTAAGCAGGAATAGGAGTAGTCAAGGAGATAAGTTGGTATTCTTAGGGGACAATATGGAAGAAAGAGATGAATATACAGAGTCAAGAACTATTAATAAATCTGCAGCCGTACAAGAAGCCAAGGCCAGTGTTGAAGTTGAAGTGCTAACTAGTCTTGCAAATGAGCAAATGCATTCAGCTCCTAACTATCTGGAATTGGGAACAATTCGAGACTGGACCAGTAAAACTGGCAGTCCAGATGAAGAAAAACCAGGGGTCAAACAGAATATGGAGGAAGATAGGAAGGAACTTGGTTTGGGAGAAGCCCACCGTGGATTACCAGAAAAAAGCAGTCAGACTATCTCTAAACTTGCTGATAATGATCAAGATGAAGCTGGCAATTTATTATCCAGCGATAAAGATACTGAAAATTTAATATTACCTATTGAAGTTGAGACAACGGCTCTTCTTAATGAGTGCTCGGAACCTCCAACTGAAGATAACAACAAAAATTATATTGAACAGGCGAACCCTCCTATAGAAGATTCAATTCAAAATACTTCTATAACAAATTTAAATATGGTCCCCGATAATTCTCCAGAGGTGGGTTGCAAGGATAAGAGAGTTTTAAAATCAAAAAAGAAAAATTATATCTTAAGGTCCCTTATAAGTAGTGACAGAGTTTTGCGTTCAAGGACCCAAGATAAAGCTAAAGCTCCTGAACCAAGTAATGACTTGAGTAATGTTACTGCTGGAGAGGAGGGAAAAGGGAAGAAGAAGAATAGAAAGATAAAGGGAAAGGGAGCAAGAGTTGATGAGTTTTCATCAATCAGGAATCATTTGAGATATTTAGTGAACCGCATCAAATATGAACAGAGCTTGATTGAAGCTTATTCTAGCGAAGGCTGGAAAGGGTTCAGGTATCTGCGATTACTTGCAAGTGCTCACCTCTCAGATAAATTGAAGCCTGAAAAGGAACTTCAACGTGCATCAAATGAAATAATGCGACGCAAATTGAAAATAAGAGATCTATTTCAACGTATTGATGCACTCTGTTCTGAAGGAAGGTTTTCTGAAGCTTTATTCGATTCTGAAGGCCAGATAGATAGTGAGGATATATTCTGTGGAAAATGTGGATCCAAGGAACTGTCCCTTGAGAATGACATCATACTATGTGACGGTGTCTGTGATCGTGGGTTCCACCAGTTCTGTTTAGAACCACCTTTGCTAAACTCAGACATCCCACCAGATGATGAGGGATGGCTATGCCCTGGATGTGATTGCAAAGATGATTGCATTGATCTTCTTAATGAATTTCAAGGATCAAATCTTTCTATTACTGATGGTTGGGAGGTAATAATAATTTTCCAACATATGCTCAAAAGGTGCTTTTGGTTGGTTGTTATTTTATTATATTCTTCTAACTCTGTGCAGAAAGTCTTTCCCGAGGCAGCGGCAGCAGCAGCTGGCCAGAGTTCTGATCACACCATGAGTCTCCCTTCAGATGATTCTGATGATGGTGATTATGATCCTGATGTTCCAGATGCTATTGACCAGGATGGTGAATCGAGGTCTGATCACTCAAGCTCTGATCAATCAAGTTCTGATCTATCAAGTTCTGATAAATCTGGGTATGCTTCTGCTTCTGCTTCTGAGGAATTGGAGGCTCCACCCAATGATGACCAGTACTTGGGTCTCCCTTCAGATGACTCGGAGGATGATGATTATGATCCTGGTGCTCCAGTGCGTGATGAAGGTGTTGGACAGGAAAGTTCAAGTTCTGACTTTACATCTGATTCTGAGGATCTAGCTGCACTTGTTGATAACGGGTCGTCCAAAGATGATAACATAGCGTCTTCTCCATTAAATAATACTGTGCCTGTAAGAAACTCTGATGGGCAAAGTTCTGGACGCGGTCCTAACAAGAATGCACAACATAACAAGTTATCAAGTCTAGTAGGGTCAGGTCCTGATGAGGGTGGTCTTGAACTAGTTTCGGGAAGAAGACATGTGGAGCGATTGGATTACAAGAAGCTTCATGATTATATGGACGACTCTCTCTCAAACATAGTTGACTGGCCGTGGGAATTCAAAACTTTGATGGGAAGCCTTGGTACATGTTCTGTGTCTTGTGTGGATAAATTGAATGAGACATTCGGGAATGTTCCTACCGACTCGAGCGATGACACATATGGCAGTGATTCTATAGATTCAAGTGATGACAGAGGTCGTGGTAGGAGTACAAGGAAGGGAAGTCCTAAAAACCCGGTTCCTGCATTGTCAAGAAATGGAACTGATGATTTGAAAAATATAAAAACTAAACGCAGTTCTAAGAGAACTCGTCAAAAGCCAGCTGCTGAAAATATGGATAATTCTGTGACTAAAACTCCTGAAGGCACTTTGAAATCTAGTTCTTCTGTTAGACGAACCACTTCATCATCACATAGAAGGCTCAGTCAACCTACATTGGAGGTAATTCTTCTTCTTCTTAGTTCTTTTTTCTTTGCAGCTCTGTTTTGGTTCCAAAACATTATCCTTAACAAGATGTTATTTTCTTATGTGTATATGCTTTGGTCACATTTTCTTGCTCTTGGGTCTAACTTGCTAGCACCCCTATCAGTACATCCAAATATTTCTAGAGCCATGGAGTTTTTAACCAAGATTGTGGAGCACTTGAACGGTGTTCTAAAATTCAAGACCCTAGATGGCATTCTATTGATCAGGTTTGTAGAGTGTAAATTGCTTCACCTGAATGATATTTGGACCATGAGCAAAAGACTCCTTGCATCATTCCAAGAAAATCAGTATCCTGAACGAGCTACAAAGGAGAGTTTGGCACGAGAACTAGGGCTCAGTCTGAAGCAGGTTATGCATTGGGTTAGTAAATGGTTTGAGAATACACGTTGGAGCACACGCCATCCCTCCAGTGAAGCTAATAAAGCAAAGAGTGCTTCAAGAATGGGCACTCAATCATCTCAGACAAGTAGAAAACCTCCCAAGCCTGAGCAAGAATCTGGTGCATGTTTCAGAGACACCTGCAGCAATGGTGCTCAACATCAAGAATCACCAAAGGCAATTAGTGTTGTGGCCCCATGTCAGAGTGGGGTTACAGGGGATGACAAATTAGCGAATCAGAAACCTAAAAGGCCAGAATCTGCTGCTACAAAATCCAGAAAACGGAAGGGCAGGTCAGATCAAGTGGCATCCCGTTCAAAGGACAGAAAGAAATCACGAAAGCCTCCAGCTAAGTCATCAAAAGTTGATGAAATTCAAACAGCTGATAAGGTTAAGAAGAGGAGGAGGAAATCCATGTAG 3615 41.11 MSGGSGTETELECTKFRVRITLMLICMFCFSITDPLNVLTLEHLLVFVLSGGWLMVVTMVSLLCQIIKTDKCPWRSSLKRVLECSILLMRIRKRYQKILKSEQPLVEVSRNRSSQGDKLVFLGDNMEERDEYTESRTINKSAAVQEAKASVEVEVLTSLANEQMHSAPNYLELGTIRDWTSKTGSPDEEKPGVKQNMEEDRKELGLGEAHRGLPEKSSQTISKLADNDQDEAGNLLSSDKDTENLILPIEVETTALLNECSEPPTEDNNKNYIEQANPPIEDSIQNTSITNLNMVPDNSPEVGCKDKRVLKSKKKNYILRSLISSDRVLRSRTQDKAKAPEPSNDLSNVTAGEEGKGKKKNRKIKGKGARVDEFSSIRNHLRYLVNRIKYEQSLIEAYSSEGWKGFRYLRLLASAHLSDKLKPEKELQRASNEIMRRKLKIRDLFQRIDALCSEGRFSEALFDSEGQIDSEDIFCGKCGSKELSLENDIILCDGVCDRGFHQFCLEPPLLNSDIPPDDEGWLCPGCDCKDDCIDLLNEFQGSNLSITDGWEVIIIFQHMLKRCFWLVVILLYSSNSVQKVFPEAAAAAAGQSSDHTMSLPSDDSDDGDYDPDVPDAIDQDGESRSDHSSSDQSSSDLSSSDKSGYASASASEELEAPPNDDQYLGLPSDDSEDDDYDPGAPVRDEGVGQESSSSDFTSDSEDLAALVDNGSSKDDNIASSPLNNTVPVRNSDGQSSGRGPNKNAQHNKLSSLVGSGPDEGGLELVSGRRHVERLDYKKLHDYMDDSLSNIVDWPWEFKTLMGSLGTCSVSCVDKLNETFGNVPTDSSDDTYGSDSIDSSDDRGRGRSTRKGSPKNPVPALSRNGTDDLKNIKTKRSSKRTRQKPAAENMDNSVTKTPEGTLKSSSSVRRTTSSSHRRLSQPTLEVILLLLSSFFFAALFWFQNIILNKMLFSYVYMLWSHFLALGSNLLAPLSVHPNISRAMEFLTKIVEHLNGVLKFKTLDGILLIRFVECKLLHLNDIWTMSKRLLASFQENQYPERATKESLARELGLSLKQVMHWVSKWFENTRWSTRHPSSEANKAKSASRMGTQSSQTSRKPPKPEQESGACFRDTCSNGAQHQESPKAISVVAPCQSGVTGDDKLANQKPKRPESAATKSRKRKGRSDQVASRSKDRKKSRKPPAKSSKVDEIQTADKVKKRRRKSM 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2479320 2489180 + CmoCh04G004960.1 Cmo04g00496 379471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00496 1204 Pfam Homeodomain 1026 1069 IPR001356 GO:0003677
Cmo04g00496 1204 SMART HOX_1 1022 1078 IPR001356 GO:0003677
Cmo04g00496 1204 Gene3D - 1023 1083 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 1182 1196 - -
Cmo04g00496 1204 Pfam PHD-finger 474 529 IPR019787 -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 886 914 - -
Cmo04g00496 1204 ProSiteProfiles 'Homeobox' domain profile. 1027 1074 IPR001356 GO:0003677
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 330 365 - -
Cmo04g00496 1204 CDD homeodomain 1025 1075 IPR001356 GO:0003677
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 712 752 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 588 763 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 1108 1122 - -
Cmo04g00496 1204 PANTHER HOMEOBOX PROTEIN HAT3.1 575 785 - -
Cmo04g00496 1204 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 262 552 - -
Cmo04g00496 1204 CDD PHD_PRHA_like 474 526 IPR045876 -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 821 914 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 1071 1204 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 1071 1100 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 630 647 - -
Cmo04g00496 1204 ProSiteProfiles Zinc finger PHD-type profile. 472 529 IPR019787 -
Cmo04g00496 1204 SUPERFAMILY Homeodomain-like 1025 1074 IPR009057 -
Cmo04g00496 1204 SMART PHD_3 474 527 IPR001965 -
Cmo04g00496 1204 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1024 1092 - -
Cmo04g00496 1204 PANTHER HOMEOBOX PROTEIN HAT3.1 262 552 - -
Cmo04g00496 1204 PANTHER HOMEOBOX PROTEIN HAT3.1 1024 1092 - -
Cmo04g00496 1204 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 575 785 - -
Cmo04g00496 1204 MobiDBLite consensus disorder prediction 1157 1172 - -
Cmo04g00496 1204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 531 IPR013083 -
Cmo04g00496 1204 SUPERFAMILY FYVE/PHD zinc finger 464 532 IPR011011 -
Cmo04g00496 1204 ProSitePatterns Zinc finger PHD-type signature. 475 526 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00496 - - - cpep:111793998 1221.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00496 Cmo16g00355 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00496 Cmo-Chr4:2479320 Cmo15g01080 Cmo-Chr15:7154773 6.90E-06 dispersed
Cmo11g00366 Cmo-Chr11:1806812 Cmo04g00496 Cmo-Chr4:2479320 2.42E-14 transposed
Cmo16g00355 Cmo-Chr16:1640025 Cmo04g00496 Cmo-Chr4:2479320 5.67E-60 transposed
Cmo16g00354 Cmo-Chr16:1638444 Cmo04g00496 Cmo-Chr4:2479320 1.28E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9532 PF00628 PHD 4.40E-10 CL0390 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00496 Cmo_Chr04 FPKM 11.168398 11.679536 20.478916 21.478947 7.613902 8.406215 7.93736 18.859772 17.956633 17.841499