Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00499 ATGTTGCTTCCAATGTCGAAGACCCATCTCCATGGAAATGGGTTTCTTCTTGCTGTGCTTTTGATTCCTCTCTGTTTCCCCTTTTCCATGGCGGACAGCTCCGACCCTTTGAAGCTTACGTTCAATGGCCCTGCTAAACACTGGACTGATGCCATTCCTATTGGGAATGGGCGGCTTGGCGCGATGGTTTGGGGCGGTGTTGACACTGAGATTCTTCAGCTCAATGAGGATACTCTTTGGACGGGAATTCCTGCGGACTATACCAATTCGGATGCGCCCGTTGCGTTACGAGAGGTTCGAAAGCTCGTCGACGATGGAAAATATGCCGAAGCGACCGAAGCTGCGGTCAAGCTATCAGGAAAGCCGTCTGATGTTTATCAACTCTTGGGTGATATCAAGCTCGAGTTTGATGATTCGCATCAGTTGTATATCTCGGAGACTTATCGTCGAGAATTGGACTTGAATACAGCCACAGCACGAGTGAAGTACTCTGTGGGTGATGTAGAATTTACAAGGGAGCATTTTGCGTCTAGTCCGGATCAAGCGATTATAACCAAAATCTCTGCGAGCAAACCAGGGTCTTTGTCGTTCATAGTGTCGATGGATAGCAAGTTACATCATAGCTCGCGTGTAATCGATGGTCAAAATCTGATCATGCTTCAAGGAAGCTGTCGAGGCGTGAGGATCCCTCCGAAAATGGATTTGGACGAACATCCCAAGGGAATTCAATATTCTGCAGTTCTTAGTTTACAGGTCAGTGATGGCAGTGGAGTAGTACACGATTTAAACGAAAAGAAGTTAAAGGTTAATGGCTCGGATTGGGCTATCTTGCGTCTGGTGGCTTCGTCTTCGTTTAAAGGGCCATTTACAAACCCTTCATTGTCTGGGAAGGATCCTTCTTCGGAGTCGCTTGCTACAATGGAGAAGATTAAAAACATGTCGTATCAGGATCTTTACGCCCGACATTTGAATGACTACCAGAGTCTTTTTCACCGTGTTTCGTTGCATCTTTCAAAGAGCTCTAAGAATGAATCTTCTTCAACTAGCTCTGGAGGAAAGGAAGGTCGAGTAGCGTCTACTGCAGCGAGAGTAAAATCTTTTAAGATCGATGAAGATCCATCCATGATAGAACTGCTATTCCAATATAGTCGATATCTACTTATCTCTTGTTCACGGCCTGGAACTCAGGTGGCTAACCTTCAGGGTATATGGAACAAGAACATCGAACCGGCATGGGATGGTGCTCCGCACTTGAACATTAATCTCCAAATGAACTATTGGCCAGCCCTTCCCTGCAACCTTAGGGAGTGCCAGGAGCCATTGTTTGATTTCACTAACTTCTTGTCTGTCAATGGACGCAAGACTGCAAAAGTGAACTATGAAGCTAGTGGTTGGGTGGCTCATCAAGTGTCGGATATTTGGGCGAAAAGCTCTCCCGATCGAGGACAGGCTGTTTGGGCTCTATGGCCAATGGGTGGAGCATGGCTTTGTACTCATCTGTGGGAGCATTACACTTACACAATGGACAAAAATTTCTTAAAAAACAAGGCATATCCTCTGATGGAAGGATGCACGTCGTTTTTGTTGGATTGGCTAATCGAAGGCAAGGACGGATATTTGGAAACGAACCCATCAACATCCCCGGAGCACATGTTTATAGCTCCTGATGGCAAACCTGCTAGTGTAAGCTATTCGACAACAATGGATATCGCTATCATAAAAGAGGTGTTCTCATCCATCGTATCCGCTGCAGAGATTCTGGGTAAAAGCAAGGATGCTATTATCAACAAGGTCCGGATGGCTCAATCTAGGCTCTTACCTTACAAGATAGCTAGAGATGGTTCACTTATGGAATGGGCTCTTGACTTTGAGGACCGAGAAGTGCATCATCGACATGTATCGCACCTGTTCGGGCTGTATCCAGGACACACTATAACTGTCGAGAAAACTCCCAACGTTTCGAAAGCTGCAGATAATACTCTTCATAAAAGAGGAGAGGAGGGTCCAGGATGGTCCACAGCATGGAAAATCGCTCTATGGGCTCGTCTTCAGAACAGCGAGCACGCGTACCAAATGGTCAAGCATTTGTTCGATCTCGTGGACCCAGATCATGAAAGTGATTACGAAGGCGGGCTATACAGCAACTTGTTCACTGCTCACCCTCCTTTCCAAATAGACGCTAACTTCGGATTCTCGGCCGCCATTGCCGAAATGCTAGTCCAGAGCAGCATGAACGATCTGTACTTACTTCCCGCTCTTCCCCGCGACGTCTGGCCCTACGGTTGCGTTAAAGGATTGAAGGCACGGGGTGGCTTGACAGTGAACGTCTGCTGGACGGGGGGAGATCTGAACGAAGTCGGTGTTTGGTCGTCGGAGCAAATTTCGCTTACGACGTTACACTACAGAGGGACTAAAGTTGCAGCAAATTTAACATCTGGGAAAGTTTACACTTTCAATAAGCTGTTGAAATGTGTTGGAACATACTCTCTACCAAAATGA 2499 46.62 MLLPMSKTHLHGNGFLLAVLLIPLCFPFSMADSSDPLKLTFNGPAKHWTDAIPIGNGRLGAMVWGGVDTEILQLNEDTLWTGIPADYTNSDAPVALREVRKLVDDGKYAEATEAAVKLSGKPSDVYQLLGDIKLEFDDSHQLYISETYRRELDLNTATARVKYSVGDVEFTREHFASSPDQAIITKISASKPGSLSFIVSMDSKLHHSSRVIDGQNLIMLQGSCRGVRIPPKMDLDEHPKGIQYSAVLSLQVSDGSGVVHDLNEKKLKVNGSDWAILRLVASSSFKGPFTNPSLSGKDPSSESLATMEKIKNMSYQDLYARHLNDYQSLFHRVSLHLSKSSKNESSSTSSGGKEGRVASTAARVKSFKIDEDPSMIELLFQYSRYLLISCSRPGTQVANLQGIWNKNIEPAWDGAPHLNINLQMNYWPALPCNLRECQEPLFDFTNFLSVNGRKTAKVNYEASGWVAHQVSDIWAKSSPDRGQAVWALWPMGGAWLCTHLWEHYTYTMDKNFLKNKAYPLMEGCTSFLLDWLIEGKDGYLETNPSTSPEHMFIAPDGKPASVSYSTTMDIAIIKEVFSSIVSAAEILGKSKDAIINKVRMAQSRLLPYKIARDGSLMEWALDFEDREVHHRHVSHLFGLYPGHTITVEKTPNVSKAADNTLHKRGEEGPGWSTAWKIALWARLQNSEHAYQMVKHLFDLVDPDHESDYEGGLYSNLFTAHPPFQIDANFGFSAAIAEMLVQSSMNDLYLLPALPRDVWPYGCVKGLKARGGLTVNVCWTGGDLNEVGVWSSEQISLTTLHYRGTKVAANLTSGKVYTFNKLLKCVGTYSLPK 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2499610 2504534 - CmoCh04G004990.1 Cmo04g00499 379474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00499 832 Pfam Glycosyl hydrolase family 65, N-terminal domain 39 287 IPR027414 -
Cmo04g00499 832 SUPERFAMILY Six-hairpin glycosidases 298 786 IPR008928 GO:0005975
Cmo04g00499 832 Gene3D - 277 739 IPR012341 GO:0005975
Cmo04g00499 832 PANTHER ALPHA-L-FUCOSIDASE 2 28 831 - -
Cmo04g00499 832 PIRSF UCP007663 24 826 IPR016518 GO:0004560
Cmo04g00499 832 PANTHER - 28 831 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00499 K15923 AXY8, FUC95A, afcA; alpha-L-fucosidase 2 [EC:3.2.1.51] - csv:101204534 1522.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00499 Cmo16g00358 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00359 Cmo-Chr16:1657399 Cmo04g00499 Cmo-Chr4:2499610 0 transposed
Cmo16g00358 Cmo-Chr16:1653937 Cmo04g00499 Cmo-Chr4:2499610 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g651 Blo02g00947 . Bda06g01219 Bda08g00663 Bpe07g00259 . Bma05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1024 . . . . . . . . . Bpe05g00491 . . . Cmo04g00499 Cmo16g00358 . . . . Cpe14g00279 Cpe01g00419 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005477 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00499 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.05895 3.535607 2.789124