Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00500 ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCGAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGATAAGCTGAAGGAGATTTGTAATAGCTCCTAG 252 49.6 MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVNGSAADKLKEICNSS 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2505932 2506601 + CmoCh04G005000.1 Cmo04g00500 379475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00500 83 Pfam Complex 1 protein (LYR family) 4 56 IPR008011 -
Cmo04g00500 83 PANTHER OS01G0342800 PROTEIN 1 82 - -
Cmo04g00500 83 CDD Complex1_LYR_LYRM9 4 65 IPR045291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00500 - - - cmax:111482114 167.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g649 Blo02g00950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1098 . . . . . . . . . . . Bpe05g00493 . . . Cmo04g00500 . . . . . . Cpe01g00420 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013356 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00500 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.83813 10.494273 11.948787