Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00501 ATGGGAAGCATTGAAGAACAGAGGACTGTAACAGGGCTCGCCGCCAAAGACCCATCCGGGATTCTGTCTCCCTACACTTATACTCTCAGAAACACCGGCCCTGAAGATGTTTTCATTAAAGTGATTTGCTGTGGAGTATGCCACTCTGATCTTCACCAAATCAAAAATGACCTCGGCATGTCCAATTATCCGATGGTTCCTGGACATGAGGTGGTCGGAGAAGTGGTGGAGGTTGGGTCGGATGTTGGTCGGTTTAGAACAGGGGAGTTGGTCGGAGTTGGGTGTATTGTTGGATCTTGTTCGAGTTGTAATCCTTGCAATTCCGATAAGGAGCAGTATTGTAACAGGAGAATCTGGAGTTATAATGATGTGTATCATGATGGCCGTCCCACCCAAGGCGGGTTCTCCTCCGCCATGGTCGTTCACCAAAAATTTGTGGTGAAAATCCCAGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTGTTGTGCGCCGGAGTGACAGTGTACAGCCCGCTGAGTCACTTTGGGCTGAAACAGAGTGGACTCAGAGGTGGAATTTTGGGGCTAGGCGGCGTGGGGCATATGGGTGTGAAAGTGGCGAAGGCGCTGGGTCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGTGGAGGCTCTGGAAGATCTCGGCGCCGATGAGTACTTGGTCAGCTCCGACAGTACTCAAATGGAACGAGCCATTGATTCGCTGGATTACATCATTGACACAGTCCCTGTTTTTCATCCTCTCGAGCCGTATCTGTCACTTCTGAAACTCGACGGCAAATTGATCTTGATGGGCGTTATTAATAAGCCATTGCAATTCGTTTCCCCTGTTCTTATGCTCGGTAAATTTCACAAAGTTAATCTCGCCGGCAATGGTGCTCTGTTTTCAACTCTGTTTTTAACTCTGTTTATTTGGGGACGAACAGGGAGGAAGACGATTACGGGGAGCTTCATCGGAAGCATGACGGAGACGCAAGAAGTGTTGGATTTCTTCAAAGAGAAGGAGCTAACCTCCATAATTGAAGTGATAAAGCTTGATTACATTAACCAGGCTTTGGAGAGGTTGGAGAAGAATGACGTCAGATACAGGTTCGTCGTCGATGTCGCCGGAAGCAAGTTGCCTCAGTGA 1158 49.48 MGSIEEQRTVTGLAAKDPSGILSPYTYTLRNTGPEDVFIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVGRFRTGELVGVGCIVGSCSSCNPCNSDKEQYCNRRIWSYNDVYHDGRPTQGGFSSAMVVHQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKRVEALEDLGADEYLVSSDSTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINKPLQFVSPVLMLGKFHKVNLAGNGALFSTLFLTLFIWGRTGRKTITGSFIGSMTETQEVLDFFKEKELTSIIEVIKLDYINQALERLEKNDVRYRFVVDVAGSKLPQ 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2509137 2510695 + CmoCh04G005010.1 Cmo04g00501 379476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00501 385 PANTHER ALDEHYDE REDUCTASE 318 385 - -
Cmo04g00501 385 Gene3D - 349 378 - -
Cmo04g00501 385 Gene3D - 14 163 - -
Cmo04g00501 385 CDD CAD1 11 377 - -
Cmo04g00501 385 SUPERFAMILY GroES-like 17 181 IPR011032 -
Cmo04g00501 385 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Cmo04g00501 385 Gene3D - 164 292 - -
Cmo04g00501 385 Gene3D - 318 348 - -
Cmo04g00501 385 PANTHER ALDEHYDE REDUCTASE 6 292 - -
Cmo04g00501 385 Pfam Zinc-binding dehydrogenase 191 289 IPR013149 -
Cmo04g00501 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cmo04g00501 385 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 6 292 - -
Cmo04g00501 385 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 318 385 - -
Cmo04g00501 385 SMART PKS_ER_names_mod 20 376 IPR020843 GO:0016491
Cmo04g00501 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 293 IPR036291 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00501 Cmo16g00363 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00501 Cmo-Chr4:2509137 Cmo20g01090 Cmo-Chr20:10384192 4.39E-116 dispersed
Cmo11g01393 Cmo-Chr11:9761168 Cmo04g00501 Cmo-Chr4:2509137 0 wgd
Cmo16g00363 Cmo-Chr16:1669071 Cmo04g00501 Cmo-Chr4:2509137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00501 K00083 - csv:101222395 603.208