Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00508 ATGAACTCCATTACCAGAAATCTTGCTCTGTTTTGGAGCTTCGCTTTCTTCTTTCACTTTCTTCTTCATTCTCCTTCTCTGGCGCTCAACGGCGATGCCACCCTCTTGATTTCTCTCAAGCGCTCCATTCTCGGAGATCCTTTGAATGTTTTGGCTAATTGGAATTTCAATGATGATACCCCCTGTTCTTGGCGTGGGGTCACCTGTACTGACCTTCAAACCGACGGTGGTGGCTGGACGGATTTCCTCAGAGTCACTGCCCTGTCCCTCCCCGGCAGTCAGCTTCTGGGTTCCATTCCGGATGAGCTTGGAAGGATTGAACATCTTCGTCTTCTCGATCTTTCTGGTAATTTCTTTAATGGGTCTTTGCCGGTTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTGTCGAATAATGTCATCTCCGGGGAGTTGCCGGTGGCTATTGGGGGTTTGAGGAGTCTTCAGGTTTTGAATCTGTCTGATAATGCGTTGGCTGGGAAAGTGCCCAGAAATCTCACTGCTCTGAGGCATCTCACTGTGGTTTCTTTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGACGGAGGTTTTGGATCTGTCGTCTAATTTGCTTAATGGGTCTCTGCCGGCGGATTTTGGTGGGGAGAAACTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTTCGATTCCGGTGGAGTTCGCCAAGAAGATTCCGGCGAATGCGACAATGGATCTCTCTTTCAACAATCTCACCGGAGTAATTCCTCAGTCGATTGCTCTGCTCAACCAGAAAACAGAGGCGTTCGCCGGAAATGAAGATCTCTGCGGGAAGCCATTGAAGCATCTCTGTTCGATTCCTTCTTCACTCACAACTCCCCCAAATGTTTCTGATTCTTCATCTTCTTCTCCAGCTATCGCCGCCATACCCAAAACAATCGGCGCCATTCCGGCAACACAGTCCCTCGGAGGTCCAGGGACACAAACTCCTCCGCCCCGTAACACCATGAAACCCATCACAATAGCCGCAATCGCCGTTGGAGACCTCGCCGGAGTCGCCATTCTCGCCGTCGTGATTCTCTACGTCTACCATCACCAGAAACAAAAAAACCCCAATTCCAAAACCCCTAAATCCACCGTGAAGAAGCCGCCGATTGGGTCACAACAAACCCTCCAAAGTAATCAGAAAAAACCCTCGTCGGTGTTGTTCTGTTTACCCACCAAAGGCGAAGAGACATCAGAGGCAACGAGTTCCTCCGACGGCGAAGAACAAAGAGACAAACCAAGCACAACCCACGACGGAGAGAACAGAGAGAGTAAGAAAAACGGCGTTCTCGTTACAGTAGACGTAGAAACAGAGCTCGAATTGGAGACTCTGTTAAAGGCATCAGCGTATATACTCGGTGCAAGCGGCGGAAGCATTGTGTACAAGGCAGTGCTCGAGGACGGCACGGCATTCGCCGTTCGAAGGATCGGCGACAGCGGCATTGAAAGCTTCAAAGATTTCGAGACCCAAGTGAGAGCCATTGCAAAGCTTCGACATCAAAATTTAGTAAAAATTCGAGGATTCTTCTGGGGAGAAGACGAGAAGCTCATCATCTACGACTATGTCTCCAATGGCTGCCTTGCATCCTCCATCCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATTTATCATTCGAAATCCGACTAAAAATGGCAAGAGGAATCGCTCGAGGACTGACCTTCATCCACGACAAGAAGCACGTCCATGGCAATCTAAAGCCGTCCAACATCCTCCTCAACGCCGATATGGAGCCGTTAATCACCGATCTCGGCCTCGACAAGCTCCTAATCAGCGGCTCCAAAATCGCCCTTACCTCCGCCTCCACCCGAAACTTCGGCAGCCACAGATCCACACCGAATCGCGAGCACCAAGAGAGCAACGTCGGTAGCGCAATTAGCGGCGGAAGCCCGGGCGTGAGCTTGGGATCGGCATACCAGGCGCCGGAATCGCTGAGGAATCTGAAACCGAGCCCTAAATGGGACGTGTACTCGTTCGGAGTGATCTTGCTGGAGATTCTGAGCGGGAGAATCGTGACGGAGAGGGAGGCGAATCAATGGAACGGCGGTGATGAGGAAGTACGGATGAAGAAGATGATCGATTTGGTGATCAGAGAGGAAGTGGAAGGGAAAGAGGAAGCGATTATGGGGATCTTTAGATTAGGGTTTAGGTGTGTTTGTTTCGTACCTCAGAAGAGACCAACCATGAAAGAAGCTCTGCAACAACTTGATAGAATTTCTTCCTCCATTTCTTCTTCACGCTAA 2340 49.7 MNSITRNLALFWSFAFFFHFLLHSPSLALNGDATLLISLKRSILGDPLNVLANWNFNDDTPCSWRGVTCTDLQTDGGGWTDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPVSIFNASELQILSLSNNVISGELPVAIGGLRSLQVLNLSDNALAGKVPRNLTALRHLTVVSLRSNYFTGEIPGNFSSTEVLDLSSNLLNGSLPADFGGEKLRYLNFSYNKISSSIPVEFAKKIPANATMDLSFNNLTGVIPQSIALLNQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSDSSSSSPAIAAIPKTIGAIPATQSLGGPGTQTPPPRNTMKPITIAAIAVGDLAGVAILAVVILYVYHHQKQKNPNSKTPKSTVKKPPIGSQQTLQSNQKKPSSVLFCLPTKGEETSEATSSSDGEEQRDKPSTTHDGENRESKKNGVLVTVDVETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDSGIESFKDFETQVRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLASSIHRKPSSSSSSQSHLSFEIRLKMARGIARGLTFIHDKKHVHGNLKPSNILLNADMEPLITDLGLDKLLISGSKIALTSASTRNFGSHRSTPNREHQESNVGSAISGGSPGVSLGSAYQAPESLRNLKPSPKWDVYSFGVILLEILSGRIVTEREANQWNGGDEEVRMKKMIDLVIREEVEGKEEAIMGIFRLGFRCVCFVPQKRPTMKEALQQLDRISSSISSSR 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2523908 2526956 + CmoCh04G005080.1 Cmo04g00508 379483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00508 779 MobiDBLite consensus disorder prediction 427 451 - -
Cmo04g00508 779 MobiDBLite consensus disorder prediction 635 661 - -
Cmo04g00508 779 Pfam Protein kinase domain 476 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00508 779 Gene3D Transferase(Phosphotransferase) domain 1 546 778 - -
Cmo04g00508 779 ProSiteProfiles Protein kinase domain profile. 470 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00508 779 Gene3D Ribonuclease Inhibitor 29 197 IPR032675 -
Cmo04g00508 779 Gene3D Ribonuclease Inhibitor 198 294 IPR032675 -
Cmo04g00508 779 MobiDBLite consensus disorder prediction 376 451 - -
Cmo04g00508 779 PANTHER OS04G0122200 PROTEIN 24 772 - -
Cmo04g00508 779 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cmo04g00508 779 MobiDBLite consensus disorder prediction 376 410 - -
Cmo04g00508 779 SUPERFAMILY Protein kinase-like (PK-like) 475 768 IPR011009 -
Cmo04g00508 779 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Cmo04g00508 779 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 24 772 - -
Cmo04g00508 779 ProSiteProfiles Leucine-rich repeat profile. 224 245 IPR001611 GO:0005515
Cmo04g00508 779 Gene3D Phosphorylase Kinase; domain 1 437 545 - -
Cmo04g00508 779 SUPERFAMILY L domain-like 31 291 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00508 Cmo16g00366 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00506 Cmo-Chr2:2768658 Cmo04g00508 Cmo-Chr4:2523908 0 dispersed
Cmo04g00508 Cmo-Chr4:2523908 Cmo20g00981 Cmo-Chr20:5488146 0 dispersed
Cmo04g00508 Cmo-Chr4:2523908 Cmo16g00366 Cmo-Chr16:1674648 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74235 PF00069 Pkinase 5.50E-31 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00508 - - cmax:111478916 1381.31