Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00509 ATGGCTGCCTCTGCTTCACCTTCGCTCCGTACGTCGACGGTTCGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTCTTTCTTCGGCTTTTTCTGTTAATTTTCGTCCTCGGAGTGTTGGTGTGCCGCGGTTTGTTGTGTTGGTTTCTGCGTCGTTGAATGCGAAACCGACGGTTCTTGTTGCGGAGAAGCTAGGTGAAGCGGGTGTTGATCTCCTTAAGGAGTTTGCTAATGTGGATTGCTCCTATAATTTGACTCCTGAGGAGCTCTGCACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGTGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTTGTTGGGAGGGCTGGTGTTGGCATTGATAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCCTGGTGGTGAATGCTCCGACTGCGAACACGGTCGCTGCCGCTGAGCACGGAATCGCGCTTTTAACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCGTCTGTCAAAGCCGGGAAGTGGCAACGCAACAAATATGTCGGTGTATCACTTGTGGGGAAAACACTGGCTGTAATGGGATTCGGCAAAGTTGGATCTGAAGTTGCTCGTCGTGCAAAGGGTCTTGGCATGCATGTAATTGCCCATGACCCATATGCCCCAGCTGATCGTGCTCGTGCTATAGGCGTAGAACTTGTGAGCTTTGATGAAGCCATTGGAACTGCGGATTTCATCTCTTTACATATGCCTTTAACTCCATCCACGTCAAAGATTCTTAACGATGAAAATTTTGCAAAAATGAAGAAAGGAGTTAGGATTGTGAATGTTGCTCGTGGAGGAGTAATTGATGAAGAAGCTCTTGTGAGGGCGCTGGATGCTGGAATTGTTGCTCAGGCTGCACTTGATGTTTTTACTGTGGAACCACCTCCTAAGGATAGCAAGTTGATTCAGCATGAGAATGTCACTGTAACTCCTCATCTCGGTGCCAGCACAATGGAGGCTCAGGAAGGAGTTGCGGTTGAAATAGCTGAAGCTGTTGTTGGAGCCCTGAAAGGGGAGCTTGCAGCTACTGCCGTCAATGCTCCGATGGTTCCTGCAGAGGTGTTAACCGAGCTGAAACCATTTGTTGAACTCGCTGAGAAATTGGGAAGACTGGCTGTCCAATTGGTAGCTGGAGGTAGTGGTGTGAAAACTGTGAAAGTGACATATGCATCCTCCAGAGCTCCTGATGATCTTGACACCAGACTTCTTCGTGCCATGATAACCAAGGGTCTAATCGAGCCGATTTCGAGTGTTTTTGTGAACTTGGTGAATGCTGACTTTACTGCCAAACAGAGAGGACTAAGGATAAGTGAGGAGCGAGTCGTTCTGGATGGGTCACCTGAGAAACCATTAGAATACATTCAGGTCCAGATTGCCAACGTGGAATCCAGATTTGCCAGTGCAATATCAGACACCGGGGAAATTAAGGTGGAAGGACTTGTGAAAGATGGAATCCCTCACCTGACGAAGGTCGGTTCTTTCGAAGTCGACGTTAGTCTGGAAGGTAGCATCATACTGTGCAGGCAGGTTGACCAGCCAGGTATGATTGGAAGAGTTGGAAGCGTTCTGGGAGAAGAAAATGTTAATGTGAGCTTCATGAGTGTCGGGAGGATTGCTCCTCGAAAGCAGGCAGTCATGGCGATCGGTGTCGATGAACAGCCCAGCAAACAAGCTTTGAAGAGGATTGGTGACATTCCAGCAATTGAAGAGTTTGTTTTCCTCAAGTTGTAG 1800 48.83 MAASASPSLRTSTVRNSVLSSLSSKLPLSSAFSVNFRPRSVGVPRFVVLVSASLNAKPTVLVAEKLGEAGVDLLKEFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIGTADFISLHMPLTPSTSKILNDENFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTVEPPPKDSKLIQHENVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRISEERVVLDGSPEKPLEYIQVQIANVESRFASAISDTGEIKVEGLVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGRVGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKQALKRIGDIPAIEEFVFLKL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2528288 2531952 + CmoCh04G005090.1 Cmo04g00509 379484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00509 599 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 36 594 - -
Cmo04g00509 599 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 380 486 IPR045626 -
Cmo04g00509 599 Gene3D - 373 525 IPR029009 -
Cmo04g00509 599 ProSiteProfiles ACT domain profile. 527 599 IPR002912 -
Cmo04g00509 599 TIGRFAM PGDH: phosphoglycerate dehydrogenase 60 598 IPR006236 GO:0004617|GO:0006564
Cmo04g00509 599 CDD PGDH_4 60 362 - -
Cmo04g00509 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 60 369 IPR006139 GO:0016616|GO:0051287
Cmo04g00509 599 Gene3D - 62 362 - -
Cmo04g00509 599 PANTHER FORMATE DEHYDROGENASE 1 36 594 - -
Cmo04g00509 599 SMART AdoHcyase_NAD_2 187 356 IPR015878 -
Cmo04g00509 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Cmo04g00509 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Cmo04g00509 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Cmo04g00509 599 Gene3D - 526 599 - -
Cmo04g00509 599 Gene3D - 153 335 - -
Cmo04g00509 599 Pfam ACT domain 527 589 IPR002912 -
Cmo04g00509 599 CDD ACT_3PGDH-xct 528 599 - -
Cmo04g00509 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Cmo04g00509 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Cmo04g00509 599 SUPERFAMILY ACT-like 517 595 IPR045865 -
Cmo04g00509 599 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Cmo04g00509 599 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00509 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 1062.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00509 Cmo16g00367 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00027 Cmo-Chr1:99919 Cmo04g00509 Cmo-Chr4:2528288 1.43E-65 dispersed
Cmo01g01013 Cmo-Chr1:7479408 Cmo04g00509 Cmo-Chr4:2528288 5.52E-26 dispersed
Cmo04g00509 Cmo-Chr4:2528288 Cmo14g01258 Cmo-Chr14:10592170 0 dispersed
Cmo14g00662 Cmo-Chr14:3359732 Cmo04g00509 Cmo-Chr4:2528288 8.49E-28 dispersed
Cmo16g00367 Cmo-Chr16:1684042 Cmo04g00509 Cmo-Chr4:2528288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00509 Cmo_Chr04 FPKM 2.319902 1.989481 0.578304 0.687724 5.544534 4.695668 5.893239 0.703886 0.658275 0.703113