Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00511 ATGGCAATGCATCGCTATGAGCCAGCCGACGATGAAGCCCAAACCCATTTGATTTCGCTCGATTCTCTGTTTTGCGAGGAGGAGAAATGGGAGGAGGAGGAGGATGAAGATGAGCTAGAACAGACCCATCAAGCCCATGTTTTTTCTTTGGATGTTTTGGAGGAAGATCTATTTGGGGAAGATGAACGCCTTCTCTCCTTGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCAGCTTGAACCTCTGTTAATGGATCCTTCTGTCTCTGCTGCTCGTTCTTCGTCTGTGGAGTGGATGCTTAAAGTTAAATCCCATTATGGGTTTTCGTCTCTCACTGCAATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTCGAGCTTTCATTTTAGAAGTGACAAGCCATGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGGTTGAAGTTCCTCTGCCACTTGACCTTCAAGTGGAGGATGCGAAATTTGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTTTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTTACTTCATATTCATATCTTGACAACATTGTAAGAAGGCTTGGATTAAAGACCAATCTTCATTTGGAGTTCTTCAAGCGTTCTGAGAATCTCCTCCTTTCTCTTCTCTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTAGCAACTGCAACAATGATGAACATTATAGAACAGATTGAACCCCATAAGTCAATGGAGCACCAAGATCATCTTCTGGGTGTTCTTAAAATGAGCAAGGACAAAGTGCAAGGCTGTTACAATCTTGTAGTGGAGCATTCAAAGGCATGTAGCAATGGCTTATATCATTCCATCAATCCCCACAAGCGGAAGTACGAACATCATCAAGCTCCTGATAGCCCAAATGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCATGGGCATTGAGAGCAGCAGCATCAGTTTGTTCTTCACCTGAACCATCTTTCAAGAAGAACAAAACCGAAGAGCCAAGAATGTTATATCATTCTCTGAACAGGAGGGTCTGTTTGGACATTGTTGGCAGCCCTTCTTAG 1140 44.04 MAMHRYEPADDEAQTHLISLDSLFCEEEKWEEEEDEDELEQTHQAHVFSLDVLEEDLFGEDERLLSLLSKETEQLKQSNLQLEPLLMDPSVSAARSSSVEWMLKVKSHYGFSSLTAILAVAYFDRFLSSFHFRSDKPWMNQLVAVTCLSLAAKVEEVEVPLPLDLQVEDAKFVFEAKTIQRMELLVLSTLQWRMHLVTSYSYLDNIVRRLGLKTNLHLEFFKRSENLLLSLLSDSRFVGYLPSVLATATMMNIIEQIEPHKSMEHQDHLLGVLKMSKDKVQGCYNLVVEHSKACSNGLYHSINPHKRKYEHHQAPDSPNGVIDAGFSSDSSNDSWALRAAASVCSSPEPSFKKNKTEEPRMLYHSLNRRVCLDIVGSPS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2537126 2538960 - CmoCh04G005110.1 Cmo04g00511 379486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00511 379 Gene3D - 90 195 - -
Cmo04g00511 379 Pfam Cyclin, C-terminal domain 197 313 IPR004367 -
Cmo04g00511 379 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Cmo04g00511 379 SMART cyclin_7 100 188 IPR013763 -
Cmo04g00511 379 SMART cyclin_7 201 289 IPR013763 -
Cmo04g00511 379 SMART Cyclin_C_2 197 333 IPR004367 -
Cmo04g00511 379 CDD CYCLIN 101 187 IPR013763 -
Cmo04g00511 379 Pfam Cyclin, N-terminal domain 91 194 IPR006671 -
Cmo04g00511 379 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Cmo04g00511 379 PANTHER CYCLINS 13 360 IPR039361 -
Cmo04g00511 379 PANTHER CYCLIN-D3-2 13 360 - -
Cmo04g00511 379 Gene3D - 196 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00511 K14505 CYCD3; cyclin D3, plant - csv:101221213 590.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00511 Cmo11g01386 CCT
Cmo04g00511 Cmo19g00602 CCT
Cmo04g00511 Cmo11g01386 ECH
Cmo04g00511 Cmo19g00602 ECH
Cmo04g00511 Cmo16g00370 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00511 Cmo-Chr4:2537126 Cmo12g00510 Cmo-Chr12:3144150 3.98E-87 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo04g00511 Cmo-Chr4:2537126 1.54E-73 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo04g00511 Cmo-Chr4:2537126 7.26E-82 wgd
Cmo16g00370 Cmo-Chr16:1697863 Cmo04g00511 Cmo-Chr4:2537126 0 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo04g00511 Cmo-Chr4:2537126 1.16E-83 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo05g00163 Cmo-Chr5:696188 7.06E-94 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo07g00695 Cmo-Chr7:3141146 3.09E-87 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo09g00254 Cmo-Chr9:1141404 1.33E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00511 Cmo_Chr04 FPKM 21.301456 21.008354 22.118088 23.139681 20.734501 19.562101 20.29822 26.890596 25.680824 30.38003