Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00516 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAAAATTCCATTCCCGGCATCAATCCGGCGGGAAATGGTGGTGCAAATTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCAGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGTTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGCTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTTCCCCACTAAATGGAAAACCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCATAAAGCTCTACATGATACATTTTCGGCATTTGGTAGTATCCTGTCGTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGTTGAACGGTATGCTGTTGAATGATAAACAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGGCAAATCCAAATTTAACAATGTGTTTGTCAAGAATCTTTCTGAGACAACTACGGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACCAGTATCGTTGTGATGAGGGATGCTGATGGCAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAATGCTGACGATGCTGCTAGCGCAGTTGATGCCCTCAATGGAAATGTATTTGATGATAAGGAGTGGTATGTTGGGAGAGCACAGAAAAAATCTGAAAGAGAAGTAGAATTAAAGAACCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGATAGTATTAGTGATGATAAGCTTAAGGAGGTTTTTGCTCCGTTTGGCACTATCACCTCGTGCAAGGTCATGCGTGACCCCAATGGTGTGAGCAGAGGTTCTGGATTTGTTGCATTTTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATAGTTGTTAGCAAACCATTGTATGTAGCTCTTGCACAGAGGAAAGAAGATAGAAGGGCCAGATTGCAGGCTCAGTTCTCTCAAATACGACCGGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATCTATCCCCCTGGTGGTCCAGGTATCGGACAGCAAATGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAACAGGGTCAGCAAGGGCCGCGTCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACCCAGCAGCCTGTTCCAATGATGCAACAACAGATGATGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCAGGAAGAGGTCTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGTGGTATGCCGTTGCGTGATGCATCCCTCTCCTCTCAACCTGTCCCTGTAGGTGCTCTGGCATCTGCTTTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCAGACAACGCAGCCAAGGTAACTGGAATGCTTCTTGAGATGGACCAGACTGAGGTCTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCGAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCTGCAACACAGCAGCAGCAAGCAGGCAATGCAGCCGCTGATCAGCTAGCCTCTCTGTCGCTGACCGAGAACCTCGTGTCGTTTGGCCTCAGGCCTGAACGTTCTGATTTAAATTTGGGGCTTTCACTCCGGCAGCTTTCTGAAGCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCCGTCACCTACTGCAAACGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCAATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGTCAGAGTATTGCCAAGGCTCTTGTTGCCTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTTAGGTATGATAGGACTTTGCTTGTCGCTGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAATCATACCGTTGA 2475 47.68 MAAQVQAQPQNSIPGINPAGNGGANFVTTSLYVGDLDQNVTDSQLYDIFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENADDAASAVDALNGNVFDDKEWYVGRAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSISDDKLKEVFAPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALMEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQTQQPVPMMQQQMMPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLASLSLTENLVSFGLRPERSDLNLGLSLRQLSEALAMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2557223 2563565 + CmoCh04G005160.1 Cmo04g00516 379491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00516 824 Gene3D - 118 197 IPR012677 -
Cmo04g00516 824 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Cmo04g00516 824 SUPERFAMILY Ribosomal protein S5 domain 2-like 687 824 IPR020568 -
Cmo04g00516 824 Gene3D - 549 630 - -
Cmo04g00516 824 Gene3D - 680 824 IPR014721 -
Cmo04g00516 824 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cmo04g00516 824 CDD RRM4_I_PABPs 310 388 - -
Cmo04g00516 824 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Cmo04g00516 824 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cmo04g00516 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cmo04g00516 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cmo04g00516 824 CDD RRM1_I_PABPs 30 109 - -
Cmo04g00516 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cmo04g00516 824 Pfam Ribosomal protein S9/S16 692 824 IPR000754 GO:0003735|GO:0005840|GO:0006412
Cmo04g00516 824 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cmo04g00516 824 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cmo04g00516 824 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cmo04g00516 824 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cmo04g00516 824 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cmo04g00516 824 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cmo04g00516 824 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cmo04g00516 824 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cmo04g00516 824 Gene3D - 1 117 IPR012677 -
Cmo04g00516 824 Gene3D - 292 397 IPR012677 -
Cmo04g00516 824 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Cmo04g00516 824 SUPERFAMILY PABC (PABP) domain 494 640 IPR036053 GO:0003723
Cmo04g00516 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cmo04g00516 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cmo04g00516 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cmo04g00516 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cmo04g00516 824 ProSitePatterns Ribosomal protein S9 signature. 752 770 IPR020574 GO:0003735|GO:0005840|GO:0006412
Cmo04g00516 824 SMART poly_2 565 628 IPR002004 GO:0003723
Cmo04g00516 824 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Cmo04g00516 824 PANTHER POLYADENYLATE-BINDING PROTEIN 18 635 - -
Cmo04g00516 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cmo04g00516 824 PANTHER RNA BINDING PROTEIN 18 635 - -
Cmo04g00516 824 Gene3D - 198 291 IPR012677 -
Cmo04g00516 824 MobiDBLite consensus disorder prediction 474 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00516 Cmo-Chr4:2557223 Cmo11g01376 Cmo-Chr11:9611881 0 dispersed
Cmo18g01373 Cmo-Chr18:12834456 Cmo04g00516 Cmo-Chr4:2557223 7.48E-09 dispersed
Cmo04g00549 Cmo-Chr4:2723964 Cmo04g00516 Cmo-Chr4:2557223 5.24E-96 transposed
Cmo11g01373 Cmo-Chr11:9582373 Cmo04g00516 Cmo-Chr4:2557223 3.18E-98 wgd
Cmo16g00375 Cmo-Chr16:1721565 Cmo04g00516 Cmo-Chr4:2557223 0 wgd
Cmo19g00614 Cmo-Chr19:6757298 Cmo04g00516 Cmo-Chr4:2557223 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00516 K13126 - csv:101219802 1130.93