Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00519 | ATGCCTGGAAGTGTTGTTGTTGAGCCCTTGGATTTGAGCGTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTCATGCGCGATCCGGTTACGGTTAGCACTGGCCAGACCTACGACCGTTCTAGTATTGAGTCATGGGTGGCCACCGGCAACACTACGTGTCCGGTCACTAGGGCTCCGCTTACGGAGTTTACGCTCATCCCTAACCATACGTTGCGACGCCTTATCCAGGAGTGGTGCGTTGCGAATCGGTCTTATGGCGTTGAGCGGATTCCGACACCGAAGCAACCGGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCGAGAATCTCGGCTGTGCGGCGGTTGAAAGGACTTGCTCGTGACTCGGAGAAGAATCGGTCGTTGATTTCTTCTCTGAATGCTCGTGAAATTCTTATTGATGTTGTGTTTTCGAATTCGGATTCGGATTCGGTTTCTCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTTTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATCGTGATTGCAGGAACTCGAGCGTCCGAGCTTCGAGGACAAATTTGCGCTATCGACGAACTATTCGAAGGCGTGGTCGAAATTCTCAGAGATCCAACGGCGTATCCGCGAGCGGTGAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTTTAGTGAAACAAACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCATCGACCGATTCCCCGATTTGGAGAAGTACGACGCGGAGAGAGCCCTAGCAACGATCGAACTCATTTGCAGAATTCCAACTGGTTACGACGCGTTTGCCTCTCACGCGCTCACAGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCAGACAGAGCAACGGAATCAGCAGTCGGAGCTCTGGTATCGCTGTGCTCTGCGTCGGAGGAGAACCGACGGGAGGCGGTGGCGGCAGGGATTTTCACACAGCTGTTGTTGCTGGTGCAAAGCGATTGTACGGAGCGAGTTAAACGGAAATCCCAAGTGCTCCTGAAGCTTCTTCGAGATTCATGGCCGCAGGATTCCGTCGGAAACTCAGACGACTATGGTTGCAGTGAAATTGTGATACCGTTTTATTAA | 1266 | 52.37 | MPGSVVVEPLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISAVRRLKGLARDSEKNRSLISSLNAREILIDVVFSNSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRAVKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGYDAFASHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQDSVGNSDDYGCSEIVIPFY | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2579230 | 2580495 | - | CmoCh04G005190.1 | Cmo04g00519 | 379494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00519 | 421 | Gene3D | - | 92 | 407 | IPR011989 | - | |
Cmo04g00519 | 421 | MobiDBLite | consensus disorder prediction | 93 | 123 | - | - | |
Cmo04g00519 | 421 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 91 | IPR013083 | - | |
Cmo04g00519 | 421 | MobiDBLite | consensus disorder prediction | 108 | 123 | - | - | |
Cmo04g00519 | 421 | CDD | RING-Ubox_PUB | 20 | 61 | IPR045210 | - | |
Cmo04g00519 | 421 | Pfam | U-box domain | 16 | 87 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00519 | 421 | PANTHER | WDSAM1 PROTEIN | 7 | 417 | IPR045185 | GO:0061630 | |
Cmo04g00519 | 421 | SUPERFAMILY | ARM repeat | 106 | 396 | IPR016024 | - | |
Cmo04g00519 | 421 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 7 | 417 | - | - | |
Cmo04g00519 | 421 | ProSiteProfiles | U-box domain profile. | 15 | 89 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00519 | 421 | SMART | Ubox_2 | 19 | 82 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00519 | 421 | SUPERFAMILY | RING/U-box | 13 | 91 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01834 | Cmo-Chr1:13404018 | Cmo04g00519 | Cmo-Chr4:2579230 | 5.11E-44 | dispersed | |
Cmo02g00642 | Cmo-Chr2:3986947 | Cmo04g00519 | Cmo-Chr4:2579230 | 1.39E-51 | dispersed | |
Cmo04g00519 | Cmo-Chr4:2579230 | Cmo20g00163 | Cmo-Chr20:820835 | 1.33E-62 | dispersed | |
Cmo05g00134 | Cmo-Chr5:584134 | Cmo04g00519 | Cmo-Chr4:2579230 | 3.56E-36 | dispersed | |
Cmo09g00621 | Cmo-Chr9:3097835 | Cmo04g00519 | Cmo-Chr4:2579230 | 4.81E-21 | dispersed | |
Cmo12g00545 | Cmo-Chr12:3336364 | Cmo04g00519 | Cmo-Chr4:2579230 | 3.53E-42 | dispersed | |
Cmo20g01065 | Cmo-Chr20:9865701 | Cmo04g00519 | Cmo-Chr4:2579230 | 1.87E-50 | dispersed | |
Cmo04g00519 | Cmo-Chr4:2579230 | Cmo04g00079 | Cmo-Chr4:427713 | 2.98E-70 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00519 | - | - | csv:101219319 | 744.962 |