Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00519 ATGCCTGGAAGTGTTGTTGTTGAGCCCTTGGATTTGAGCGTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTCATGCGCGATCCGGTTACGGTTAGCACTGGCCAGACCTACGACCGTTCTAGTATTGAGTCATGGGTGGCCACCGGCAACACTACGTGTCCGGTCACTAGGGCTCCGCTTACGGAGTTTACGCTCATCCCTAACCATACGTTGCGACGCCTTATCCAGGAGTGGTGCGTTGCGAATCGGTCTTATGGCGTTGAGCGGATTCCGACACCGAAGCAACCGGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCGAGAATCTCGGCTGTGCGGCGGTTGAAAGGACTTGCTCGTGACTCGGAGAAGAATCGGTCGTTGATTTCTTCTCTGAATGCTCGTGAAATTCTTATTGATGTTGTGTTTTCGAATTCGGATTCGGATTCGGTTTCTCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTTTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATCGTGATTGCAGGAACTCGAGCGTCCGAGCTTCGAGGACAAATTTGCGCTATCGACGAACTATTCGAAGGCGTGGTCGAAATTCTCAGAGATCCAACGGCGTATCCGCGAGCGGTGAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTTTAGTGAAACAAACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCATCGACCGATTCCCCGATTTGGAGAAGTACGACGCGGAGAGAGCCCTAGCAACGATCGAACTCATTTGCAGAATTCCAACTGGTTACGACGCGTTTGCCTCTCACGCGCTCACAGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCAGACAGAGCAACGGAATCAGCAGTCGGAGCTCTGGTATCGCTGTGCTCTGCGTCGGAGGAGAACCGACGGGAGGCGGTGGCGGCAGGGATTTTCACACAGCTGTTGTTGCTGGTGCAAAGCGATTGTACGGAGCGAGTTAAACGGAAATCCCAAGTGCTCCTGAAGCTTCTTCGAGATTCATGGCCGCAGGATTCCGTCGGAAACTCAGACGACTATGGTTGCAGTGAAATTGTGATACCGTTTTATTAA 1266 52.37 MPGSVVVEPLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISAVRRLKGLARDSEKNRSLISSLNAREILIDVVFSNSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRAVKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGYDAFASHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQDSVGNSDDYGCSEIVIPFY 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2579230 2580495 - CmoCh04G005190.1 Cmo04g00519 379494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00519 421 Gene3D - 92 407 IPR011989 -
Cmo04g00519 421 MobiDBLite consensus disorder prediction 93 123 - -
Cmo04g00519 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Cmo04g00519 421 MobiDBLite consensus disorder prediction 108 123 - -
Cmo04g00519 421 CDD RING-Ubox_PUB 20 61 IPR045210 -
Cmo04g00519 421 Pfam U-box domain 16 87 IPR003613 GO:0004842|GO:0016567
Cmo04g00519 421 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630
Cmo04g00519 421 SUPERFAMILY ARM repeat 106 396 IPR016024 -
Cmo04g00519 421 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 417 - -
Cmo04g00519 421 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842|GO:0016567
Cmo04g00519 421 SMART Ubox_2 19 82 IPR003613 GO:0004842|GO:0016567
Cmo04g00519 421 SUPERFAMILY RING/U-box 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01834 Cmo-Chr1:13404018 Cmo04g00519 Cmo-Chr4:2579230 5.11E-44 dispersed
Cmo02g00642 Cmo-Chr2:3986947 Cmo04g00519 Cmo-Chr4:2579230 1.39E-51 dispersed
Cmo04g00519 Cmo-Chr4:2579230 Cmo20g00163 Cmo-Chr20:820835 1.33E-62 dispersed
Cmo05g00134 Cmo-Chr5:584134 Cmo04g00519 Cmo-Chr4:2579230 3.56E-36 dispersed
Cmo09g00621 Cmo-Chr9:3097835 Cmo04g00519 Cmo-Chr4:2579230 4.81E-21 dispersed
Cmo12g00545 Cmo-Chr12:3336364 Cmo04g00519 Cmo-Chr4:2579230 3.53E-42 dispersed
Cmo20g01065 Cmo-Chr20:9865701 Cmo04g00519 Cmo-Chr4:2579230 1.87E-50 dispersed
Cmo04g00519 Cmo-Chr4:2579230 Cmo04g00079 Cmo-Chr4:427713 2.98E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00519 - - csv:101219319 744.962