Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00522 ATGGCGGCGATCGCAGTGAGTAGAGCTTTGTTTCTAATTGGGTTTCTTCTGTTTCTTCAAGAAACAATGGCGGATTGTCCCTTGAACTTGAGTGGATCAAACTTTACTTTAGCTGCTTCTATTTGTTCTAACCCCAATGAAAGAGGGAAATGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCTAATGTGACTGGTGAACTAGGAGTTTCTTCAAACTTGTCTAACATTTGCCTGCAATCATTGTTTGAAACCATGGAACTGTATGGAGTTCCTAGAAATGCCACTGGTTTCTGTGGGGTTGGGACAAAGATTACAGTGAATTACGCGTGTAGAGGTCGAGAAACTGTCGAACAAATGCTGGAATCTCCAAGTTTCTCAAATGTTAGTGACAATTGTGAATTGCCTCTCTTGGAGGAAAGTGTTTGCAGGAAGTGTATCAATGCTGGGATTTTGTATCTACGTAATCTGATTGGAAGAGAAGACAATATAACGTTAAATACTTGTCGCGATGCGACGTTTGTTGCACTTGCTAGCCATCTTGATACTGCTTCAGTCGTTGATCTTGCAACATGCTTCTTTGGAGTTCAAGGTCTTGACAAGCCTCCAGATATTGCCCCAAGTCCATCAGCTGCTGCAAGTCCGGGGCCAACGATACCAGGTGTTTCCGATAATAAAAGTCATAAACGTCATTCCTACCATCTAACACTAGTGGCGGGTATTGGCATTGCGGTGACCGTGTCTTCCATATTGATTCTGGTCGTCTTGATCGTGCTGATTCGAAGGAAAAACAGAGAGCTAAAGGATTCTGATATGGCAGAGGGCAAATTGTCGAAATTCTTACCTTCTCGTCCCGTCAAAAAGTATCAGGAAGGACCTTCTACGTTTAAAAAGTTCAGCTATAAAGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGAGGATATGGAACCGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGGGAGGATGAATTTGGCCGAGAAATCGAGCTGCTCGCAAGATTACATCACAGACACCTTGTTGCTTTAAGAGGCTTTTGTGTTGATAAGCATGAACGGTTTCTTGTGTACGAATATATGACTAATGGAAGCTTGAAGGATCATCTTCATGGTCCCGGCAGGACGCCTCTAAGTTGGCAGACGAGAATACAAATTGCCATCGATGTCGCCAATGCTCTGGAGTACCTTCATTATTATTGTGATCCCCCACTATGCCATAGAGACATTAAGTCCAGCAACATTTTGCTGGATGAGAACTTTGTTGCTAAGATTGCAGATTTCGGCCTTGCGCATGCTTCAGAGGGCGGTTCTATTTTCTTTGAACCCGTAAACACCGACATCTGTGGAACACCAGGTTATATGGATCCCGAGTATGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTATGGCGTGCTGCTCCTGGAAATAGTTACGGGGAGACGTGCTATACAAGATGGTAAGAATTTAGTAGAATGGTCTCAGGTGTACATGGTTCCAGATTCAAGGATATCGGAACTAGTAGATCCAAGGATCAAGAGTTGTTTCGACTTAGAACAACTCCACACAGTCGTGTCGATTGTGAGATGGTGCACCGAGGGAGAAGGAAGGGTAAGGCCGTCAATTAAACAGGTGCTTCGAGTATTGTACGAGAGTTCGGACCCGGTGCATCAAGAGCTGGTGGAAGCTGTTGATGAAGAAGAAGAATATGGAGGGAGTGAAGGAAGGCAGAGCATGAGCAGGAGAAAAGGGCATAGAAGTGATGTGATTTTTCACAGTGGAGAAGGAAGGTATCTTGCATCTTCATCAAGCACAACAAAGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACCGGTTCACCACAATCTCCTCCCAATATTTTCTCTGTCACAGATCAATTGTTTTAG 2007 43.5 MAAIAVSRALFLIGFLLFLQETMADCPLNLSGSNFTLAASICSNPNERGKCCRYINAFVAVSVAQLANVTGELGVSSNLSNICLQSLFETMELYGVPRNATGFCGVGTKITVNYACRGRETVEQMLESPSFSNVSDNCELPLLEESVCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASHLDTASVVDLATCFFGVQGLDKPPDIAPSPSAAASPGPTIPGVSDNKSHKRHSYHLTLVAGIGIAVTVSSILILVVLIVLIRRKNRELKDSDMAEGKLSKFLPSRPVKKYQEGPSTFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVDKHERFLVYEYMTNGSLKDHLHGPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKIADFGLAHASEGGSIFFEPVNTDICGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSQVYMVPDSRISELVDPRIKSCFDLEQLHTVVSIVRWCTEGEGRVRPSIKQVLRVLYESSDPVHQELVEAVDEEEEYGGSEGRQSMSRRKGHRSDVIFHSGEGRYLASSSSTTKSYCSRSFLLETGSPQSPPNIFSVTDQLF 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2593644 2598385 + CmoCh04G005220.1 Cmo04g00522 379497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00522 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Cmo04g00522 668 PANTHER BNAC06G02630D PROTEIN 13 663 - -
Cmo04g00522 668 Pfam Protein kinase domain 318 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00522 668 MobiDBLite consensus disorder prediction 596 618 - -
Cmo04g00522 668 PANTHER OS01G0750732 PROTEIN 13 663 - -
Cmo04g00522 668 ProSiteProfiles Protein kinase domain profile. 314 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00522 668 Pfam SPARK 24 156 IPR043891 -
Cmo04g00522 668 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Cmo04g00522 668 MobiDBLite consensus disorder prediction 603 618 - -
Cmo04g00522 668 Gene3D Transferase(Phosphotransferase) domain 1 390 604 - -
Cmo04g00522 668 CDD STKc_IRAK 320 582 - -
Cmo04g00522 668 SMART serkin_6 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00522 668 Gene3D Phosphorylase Kinase; domain 1 279 389 - -
Cmo04g00522 668 SUPERFAMILY Protein kinase-like (PK-like) 295 583 IPR011009 -
Cmo04g00522 668 MobiDBLite consensus disorder prediction 210 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01341 Cmo-Chr2:7989249 Cmo04g00522 Cmo-Chr4:2593644 3.30E-58 dispersed
Cmo04g00522 Cmo-Chr4:2593644 Cmo01g00292 Cmo-Chr1:1389479 1.44E-75 dispersed
Cmo15g01410 Cmo-Chr15:9612513 Cmo04g00522 Cmo-Chr4:2593644 9.34E-57 dispersed
Cmo20g00158 Cmo-Chr20:791328 Cmo04g00522 Cmo-Chr4:2593644 8.71E-58 dispersed
Cmo16g00379 Cmo-Chr16:1744813 Cmo04g00522 Cmo-Chr4:2593644 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74236 PF00069 Pkinase 1.20E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00522 - - csv:101219079 1082.78