Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00542 ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAACGATCTACACGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAGCTGTTGTATGATGTCATTCGAAGACTCGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAATGTCGTTGCCTGTGCTGCGGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCGCTTAAGCAGCCCGGGCCACGCGATGCGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCTAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAATGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTTAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCGCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCTCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGACGAATCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGGGCAGCATTAGATGGCGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCCCCAAGATGGCACGAACAGCTCCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATCGCCGCAACTCAGCCAGCTGCTGGCGCTCCAACACCGTCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTACCGATATCCGCTCTCGGCGTTTCAAGCCTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 49.11 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDASVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDESFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2688163 2690308 - CmoCh04G005420.1 Cmo04g00542 379517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00542 428 Pfam Tub family 115 423 IPR000007 -
Cmo04g00542 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cmo04g00542 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cmo04g00542 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cmo04g00542 428 PANTHER TUBBY-RELATED 1 428 - -
Cmo04g00542 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Cmo04g00542 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cmo04g00542 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cmo04g00542 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cmo04g00542 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00542 Cmo-Chr4:2688163 Cmo15g00602 Cmo-Chr15:2928155 0 dispersed
Cmo17g00296 Cmo-Chr17:1778045 Cmo04g00542 Cmo-Chr4:2688163 1.50E-113 dispersed
Cmo16g00390 Cmo-Chr16:1804780 Cmo04g00542 Cmo-Chr4:2688163 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9537 PF01167 Tub 7.60E-117 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00542 K19600 - csv:101216314 834.713