Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00546 ATGGCAAAGAAGAGACGAGTTCGATCGCCATCAAAGGACAACGAAATGAGAGAAAGCGAACTAGGGTTATCATTAGGGCTTCATACAAACAATGATTTGGAAGAAGATAATGATCATAAGGATCAAGAAGAAGAAACAAGAGAAAAGAGCAAAGAACATGTAACATCCAACATGAAGGCAATGCAGCAAAGCAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCTCCACACAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACGATGAACGATGGTTGCCAATGGCGGAAATACGGTCAAAAAATTGCGAAGGGGAATCCATGCCCTCGAGCCTACTATCGTTGCACAGTTGCACCGGGATGCCCCGTGCAAAGATGCTTAGAAGACATGTCGATACTAATAACAACATACGAAGGAACACACAACCATCCACTCCCTGTCGGAGCCACCGCCATGGCTTCAACAGCTTCAGCAGCCGCTTCGTTTACGCTATTAGACTCCACAAATCTCCCTCTTCCAAACCCTCAAAACCCTAATAATATTCTAAACTCCTCTTCCTATTCTGCAAACCCTAACCACCCCTCCGCCGGGCTCCTCCTCAACCTCACGGCCAACAACTTCTACGCTCCGGTGGCCACCGCCTCCACCTCCGCCGCACATAATTCCTGTTATCAAAGCAACTTTCAAGCTAATCTTTTTAGTCGTCCCCTTGATGGGCGGACTTGGAAATCGGCGGCGGAGGAGAATAAGCAGCCGCTGGTGGGGGAGAGTGTCTCCGCCATTGCTTCTGACCCCAAGTTTCGAGTGGCGGTGGCGGAAGCCATTTCGTCGCTCATTAACAAAGACGGCAACCTCACCGTACCCAATTCTGTCAAACGCTCTTCTTTTGGTACCGAAAAGGATGGCGACGGCGGCGATAGTGGCGGCGGGAACAACAATTGGGTTGTCCAATCGCTCTCCACCAATGCAAAATGTGTTAATTGTGAAAAATAA 1011 49.06 MAKKRRVRSPSKDNEMRESELGLSLGLHTNNDLEEDNDHKDQEEETREKSKEHVTSNMKAMQQSKPQRPELQGMAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFTLLDSTNLPLPNPQNPNNILNSSSYSANPNHPSAGLLLNLTANNFYAPVATASTSAAHNSCYQSNFQANLFSRPLDGRTWKSAAEENKQPLVGESVSAIASDPKFRVAVAEAISSLINKDGNLTVPNSVKRSSFGTEKDGDGGDSGGGNNNWVVQSLSTNAKCVNCEK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2699744 2702124 - CmoCh04G005460.1 Cmo04g00546 379521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00546 336 MobiDBLite consensus disorder prediction 31 55 - -
Cmo04g00546 336 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 3 325 - -
Cmo04g00546 336 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 325 IPR044810 GO:0003700
Cmo04g00546 336 MobiDBLite consensus disorder prediction 1 81 - -
Cmo04g00546 336 SUPERFAMILY WRKY DNA-binding domain 88 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g00546 336 Pfam WRKY DNA -binding domain 96 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g00546 336 MobiDBLite consensus disorder prediction 295 319 - -
Cmo04g00546 336 Gene3D WRKY domain 80 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g00546 336 ProSiteProfiles WRKY domain profile. 90 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g00546 336 SMART WRKY_cls 95 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00546 Cmo-Chr4:2699744 Cmo11g01889 Cmo-Chr11:13133736 5.17E-47 dispersed
Cmo16g00393 Cmo-Chr16:1816509 Cmo04g00546 Cmo-Chr4:2699744 2.32E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9538 PF03106 WRKY 4.20E-19 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00546 - - csv:101215114 342.428