Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00546 | ATGGCAAAGAAGAGACGAGTTCGATCGCCATCAAAGGACAACGAAATGAGAGAAAGCGAACTAGGGTTATCATTAGGGCTTCATACAAACAATGATTTGGAAGAAGATAATGATCATAAGGATCAAGAAGAAGAAACAAGAGAAAAGAGCAAAGAACATGTAACATCCAACATGAAGGCAATGCAGCAAAGCAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCTCCACACAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACGATGAACGATGGTTGCCAATGGCGGAAATACGGTCAAAAAATTGCGAAGGGGAATCCATGCCCTCGAGCCTACTATCGTTGCACAGTTGCACCGGGATGCCCCGTGCAAAGATGCTTAGAAGACATGTCGATACTAATAACAACATACGAAGGAACACACAACCATCCACTCCCTGTCGGAGCCACCGCCATGGCTTCAACAGCTTCAGCAGCCGCTTCGTTTACGCTATTAGACTCCACAAATCTCCCTCTTCCAAACCCTCAAAACCCTAATAATATTCTAAACTCCTCTTCCTATTCTGCAAACCCTAACCACCCCTCCGCCGGGCTCCTCCTCAACCTCACGGCCAACAACTTCTACGCTCCGGTGGCCACCGCCTCCACCTCCGCCGCACATAATTCCTGTTATCAAAGCAACTTTCAAGCTAATCTTTTTAGTCGTCCCCTTGATGGGCGGACTTGGAAATCGGCGGCGGAGGAGAATAAGCAGCCGCTGGTGGGGGAGAGTGTCTCCGCCATTGCTTCTGACCCCAAGTTTCGAGTGGCGGTGGCGGAAGCCATTTCGTCGCTCATTAACAAAGACGGCAACCTCACCGTACCCAATTCTGTCAAACGCTCTTCTTTTGGTACCGAAAAGGATGGCGACGGCGGCGATAGTGGCGGCGGGAACAACAATTGGGTTGTCCAATCGCTCTCCACCAATGCAAAATGTGTTAATTGTGAAAAATAA | 1011 | 49.06 | MAKKRRVRSPSKDNEMRESELGLSLGLHTNNDLEEDNDHKDQEEETREKSKEHVTSNMKAMQQSKPQRPELQGMAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFTLLDSTNLPLPNPQNPNNILNSSSYSANPNHPSAGLLLNLTANNFYAPVATASTSAAHNSCYQSNFQANLFSRPLDGRTWKSAAEENKQPLVGESVSAIASDPKFRVAVAEAISSLINKDGNLTVPNSVKRSSFGTEKDGDGGDSGGGNNNWVVQSLSTNAKCVNCEK | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2699744 | 2702124 | - | CmoCh04G005460.1 | Cmo04g00546 | 379521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00546 | 336 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
Cmo04g00546 | 336 | PANTHER | WRKY TRANSCRIPTION FACTOR 9-RELATED | 3 | 325 | - | - | |
Cmo04g00546 | 336 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 3 | 325 | IPR044810 | GO:0003700 | |
Cmo04g00546 | 336 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Cmo04g00546 | 336 | SUPERFAMILY | WRKY DNA-binding domain | 88 | 152 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo04g00546 | 336 | Pfam | WRKY DNA -binding domain | 96 | 150 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo04g00546 | 336 | MobiDBLite | consensus disorder prediction | 295 | 319 | - | - | |
Cmo04g00546 | 336 | Gene3D | WRKY domain | 80 | 153 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo04g00546 | 336 | ProSiteProfiles | WRKY domain profile. | 90 | 152 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo04g00546 | 336 | SMART | WRKY_cls | 95 | 151 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00546 | Cmo-Chr4:2699744 | Cmo11g01889 | Cmo-Chr11:13133736 | 5.17E-47 | dispersed | |
Cmo16g00393 | Cmo-Chr16:1816509 | Cmo04g00546 | Cmo-Chr4:2699744 | 2.32E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9538 | PF03106 | WRKY | 4.20E-19 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00546 | - | - | csv:101215114 | 342.428 |