Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00566 ATGGACGTGGAGTCCTCCCGTTCGCCTCGGGCGGTTGAGAAAGATGGCGGTAACAAGGAGGAAGAGAAGCATGGGAGTGACGAGAAGGACGACACCGACACCGACACCGACATGCCGTCGTCGTTGAACCTTAGAGAGCTTTCCAAGGTTATACTTCCACCTTTGGGAGTGTCGAGCTTCACTGATGGAAGTAAATTTAAGGGTAATAAATGGATCGTCTCTCCCATGAGCTCGAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTATCCATTGGAAGTGGCGTTCAAGGACGCAATTCCGAAGCGGGAATTATTAATTGCAGACAATGTTGTCGATCTCTTCTTCGCCTTCGACATCTTCCTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTTGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACAATTGGATACCTTTTTGTTAGCAACTATAATGGTGGTCTCCCTTATGCCCTCCTGGGATTGCTCAAGTTTTGGCGACTACGACGTGTCAAGCAATTTTTCACAAGGCTAGAGAAGGACATTAGATTCAGCTACTTTTTGGTTCGATGTGCTAGGCTTCTATCTACCTGGATAGGAACTATGAATCCAAATTTTAAAGAGATTAGCTTTGGAGTGAGATATATTTCAGCCTTGTATTGGTCTATCACCACCATGACGACTGTTGGTTATGGTGATCTTCATGCTGTGAACATTGTAGAGATGATCTTCATCATTTTCTACATGCTCTTCAATCTCGGCTTAACCGCTTACTTGATCGGTAACATGACGAACTTAGTCGTCGAAGGAACTCGTCGCACGATGGAATTTAGAAACAACATCGAAATGGCGTCAAACTTTGTTAACCGAAACCGGCTGCCTTCAAGATTGAAGGAACAGATATTGGCATATATGTGTTTGAGATTCAAGGCAGAGAGCCTAAACCAACAACAGCTGATTGATCAGCTTCCAAAGTCGATATGTAAAAACATCTGTCAGCAATTGTTTTTGCCAACAGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGCATTGCTGGTGAGCATCATTGTAGCAAAGATGAAAGCTGAGTATATACCTCCGAAGGAGGACGTGATTATACATAACGAAACCCCTGATGAAGTTTATATCATCGTGTCCGGGGAAATCGAAATTATCGACTGTGAGATGGAGCGGGAGCGGATTGTTGGGACACTACAGTGTGGCAGTATGTTTGGGGAAGTTGGAGCACTTTGTTGCAAAAACCAAAATCTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTTAAAACAAGTATACTACAAGAAGCTATGCATGTCAGGCAAGACGACAGTATGGTCATTGTCAAGAACTTCCATCAGGAAAGGCAGGCCAGCCACAGAATCACCATAGAAGGTTCAGTTGAAAAGGAAGCGCCAGCGTTCAATGAAGAAAAGGATCAAAGTTTCAATTGGAAACACTCCATTGAATTAGACTTTGGTAGAGTAAATGTATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGAAGATCCTGGAAAGCTCATCAGACTGCCACATTCAATGGAGGAGCTCAAAAGAGTTGCAGGTGAAAAGCTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGACTCCATTGATGTGGTAAGGGATAATGATAAGCTTTTCTTTTCATAG 1833 43.32 MDVESSRSPRAVEKDGGNKEEEKHGSDEKDDTDTDTDMPSSLNLRELSKVILPPLGVSSFTDGSKFKGNKWIVSPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFKDAIPKRELLIADNVVDLFFAFDIFLTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETIGYLFVSNYNGGLPYALLGLLKFWRLRRVKQFFTRLEKDIRFSYFLVRCARLLSTWIGTMNPNFKEISFGVRYISALYWSITTMTTVGYGDLHAVNIVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNNIEMASNFVNRNRLPSRLKEQILAYMCLRFKAESLNQQQLIDQLPKSICKNICQQLFLPTVEKVYLFKGVSKETLALLVSIIVAKMKAEYIPPKEDVIIHNETPDEVYIIVSGEIEIIDCEMERERIVGTLQCGSMFGEVGALCCKNQNLTYRTKTLSQLLRLKTSILQEAMHVRQDDSMVIVKNFHQERQASHRITIEGSVEKEAPAFNEEKDQSFNWKHSIELDFGRVNVYKGHPVARKQASCEDPGKLIRLPHSMEELKRVAGEKLGFDARNAVLTNEEGSEIDSIDVVRDNDKLFFS 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2810012 2816251 + CmoCh04G005660.1 Cmo04g00566 379541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00566 610 MobiDBLite consensus disorder prediction 1 40 - -
Cmo04g00566 610 Gene3D Helix hairpin bin 302 365 - -
Cmo04g00566 610 Pfam Cyclic nucleotide-binding domain 403 481 IPR000595 -
Cmo04g00566 610 SUPERFAMILY cAMP-binding domain-like 302 497 IPR018490 -
Cmo04g00566 610 Gene3D - 82 298 - -
Cmo04g00566 610 PANTHER POTASSIUM CHANNEL AKT1 536 609 IPR045319 GO:0005249|GO:0006813
Cmo04g00566 610 Pfam KHA, dimerisation domain of potassium ion channel 538 609 IPR021789 -
Cmo04g00566 610 ProSiteProfiles KHA domain profile. 538 610 IPR021789 -
Cmo04g00566 610 SUPERFAMILY Voltage-gated potassium channels 75 298 - -
Cmo04g00566 610 Pfam Ion transport protein 80 226 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo04g00566 610 PANTHER POTASSIUM CHANNEL AKT1 46 508 IPR045319 GO:0005249|GO:0006813
Cmo04g00566 610 PANTHER POTASSIUM CHANNEL AKT2/3 46 508 - -
Cmo04g00566 610 PANTHER POTASSIUM CHANNEL AKT2/3 536 609 - -
Cmo04g00566 610 Pfam Ion channel 232 297 IPR013099 -
Cmo04g00566 610 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g00566 610 SMART cnmp_10 375 496 IPR000595 -
Cmo04g00566 610 Gene3D Jelly Rolls 369 508 IPR014710 -
Cmo04g00566 610 ProSiteProfiles cAMP/cGMP binding motif profile. 375 498 IPR000595 -
Cmo04g00566 610 CDD CAP_ED 375 482 IPR000595 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00566 Cmo16g00413 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00566 Cmo-Chr4:2810012 Cmo13g00587 Cmo-Chr13:6533380 2.97E-156 dispersed
Cmo16g00413 Cmo-Chr16:1923154 Cmo04g00566 Cmo-Chr4:2810012 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00566 K21867 - csv:101205212 992.26