Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00573 | ATGGCTTCTCGTTTCTGGTCCCAGGGTGGTGGTAGTGGTAGTGATTCTGAAGCGGAGAAGAGTGACTATGATGAAGAGATTGACGACCTACAAGCTGATCCTAGCTCCCAAGCGAATAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGACGATTCTGATAAAGATAGACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTTCTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCTTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAGGTCATGCGTGTTATGGAGTCTGAGAAGGTGCCAACTCTTTATATTAAAGCACTTGTGATGTTGGAGGACTTCCTAAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGCACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTAAAGAAGAACAATAGGCAATATGAAGAGTTAATTACAAAGTGTAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGATGATGAGATGGAAACGGAGGATGATGATGATGACGACGACGATTCTGTAATTGAGGAGGACCCTACTAAAATTTTGTCAGGATCAGAAGATGAAGAGGATGACGAAGAAGACCAAGAGGAGCCCGATGGCCCTTGGGTGAAACAGTTGAGCAAACGGGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCGAGAGAGATCACATGGGACACTGTTAACAAGAAATTTAAGGAGGTTGTGGCTGCCCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACGTTCTTAACAAGAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAATATGCTTTCTATTATTGACATTCTTATGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAACGAGAGCCAGAAGCCAGCAGACTATGAGGGCACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGCTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTGAGACGTGTCGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTCGCAGAGCTGTCCGAAGATGGAGCTAGTGGAGATGCTAGTGAGGAGGCTAAAGTTGCAGAAGAGATTAGGGGCCCTGCTGCATTTATTGTCACGCCGGAGGTTGTACCTCGTGTACCCACCTTTCCAGAGAGTAGTAGAGCTTTTATGGACATTCTGGTGACCCTTATATACCAATATGGAGACGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCGCTCTTTGATGAATTTTATATTTCTAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGATTTCGGGTTGGCCTGATTAGTGAAGCACATGGCTGCCTTTCAGAATTATATTCAGGTGGGAGGGTGAGGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATTATGAAAAGACTCCAGAGCAGGAAAGGCTTGAAAGGAGGAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTGATATGTGCTATGCTGCTGGAAGTTCCCAACCTGGCAGGCAGTGTTCATGATGCAAAGCGCAAGGTTATTAGCAAGAACTTTAGAAGGTTACTGGAGGTGAGTGAGAGACAAACGTTCACTGGTCCTCCCGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGCGATTTCCAAAAAGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGAAATCGTGATGATGTGCTGGAAATGGTTAAAGTAAAGATCAAGGTGGAAGCTCTGAGGACGTACCTTCTCACGTACTCTTCCTCTTATGATTCTCTGAGTTTGGACCAGCTGACTCGAATGTTCGACATCGCAGAGGGTCAAACACACAGTATCGTTAGCAAGATGATGATAAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGATGTGTCATCTTCAATGATGTTGCGCTCACCCGGTTACAGGGCTTGGCGTTCCAGTTGGCAGATAAGCTGTCTATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGAATAGGAGGAGTAGATTTACCGATGAGGCGAAGAGACAACCAAGAGTATGCTGCCGGAGCTGTAGGTGGTGGTAGCAGGTGGCCAGACAATCAAGGAAGGCAAGGTGGCGGTAGTTCGCGTGCAGGGTATAGCAATGGAGGGCGTGGCGAAGGTGGGGGTGGCGGATATGGTAGAGACCGGACGGGTCAGTCACGAGGAGGCAATGCAGGAGGATATCAAAGCACCCGTTATCAAGACGCTGCATATAGATCGGGGAGGAGTGCTTATCAGTCTGGTTCTGTCCGAGGATCCCAGATGGGTGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTATTGCTTAA | 2808 | 45.58 | MASRFWSQGGGSGSDSEAEKSDYDEEIDDLQADPSSQANRSRYLQGNASDSDDSDKDRRTVRSAKDKRFEEMSASVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVMESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNRQYEELITKCRENPEVEEEKDDEMETEDDDDDDDDSVIEEDPTKILSGSEDEEDDEEDQEEPDGPWVKQLSKRDKLMDKQFMKDPREITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTRVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILMQNSNIVVDDMVEPDENESQKPADYEGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGASGDASEEAKVAEEIRGPAAFIVTPEVVPRVPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALFDEFYISSDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEAHGCLSELYSGGRVRELLAQGVSQSRYYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNLAGSVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDDVLEMVKVKIKVEALRTYLLTYSSSYDSLSLDQLTRMFDIAEGQTHSIVSKMMINEELHASWDQPSGCVIFNDVALTRLQGLAFQLADKLSILAETNERAVEARIGGVDLPMRRRDNQEYAAGAVGGGSRWPDNQGRQGGGSSRAGYSNGGRGEGGGGGYGRDRTGQSRGGNAGGYQSTRYQDAAYRSGRSAYQSGSVRGSQMGASARMVSLNKGVIA | 935 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2855882 | 2860716 | + | CmoCh04G005730.1 | Cmo04g00573 | 379548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 839 | 896 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 178 | 200 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 139 | 233 | - | - | |
Cmo04g00573 | 935 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 722 | 810 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 139 | 157 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Cmo04g00573 | 935 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 863 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cmo04g00573 | 935 | SUPERFAMILY | Winged helix DNA-binding domain | 730 | 790 | IPR036390 | - | |
Cmo04g00573 | 935 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 933 | - | - | |
Cmo04g00573 | 935 | Coils | Coil | 147 | 174 | - | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 207 | 223 | - | - | |
Cmo04g00573 | 935 | ProSiteProfiles | PCI domain profile. | 621 | 793 | IPR000717 | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 49 | 74 | - | - | |
Cmo04g00573 | 935 | Pfam | PCI domain | 661 | 789 | IPR000717 | - | |
Cmo04g00573 | 935 | MobiDBLite | consensus disorder prediction | 158 | 177 | - | - | |
Cmo04g00573 | 935 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 48 | 653 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cmo04g00573 | 935 | SMART | PINT_4 | 722 | 810 | IPR000717 | - | |
Cmo04g00573 | 935 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 933 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g00421 | Cmo-Chr16:1965840 | Cmo04g00573 | Cmo-Chr4:2855882 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00573 | K03252 | - | csv:101203990 | 1511.89 |