Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00575 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAATAGTCGTCGCCGCCCTAAGAAGGCAGCTCAGTCGACACCGTTGTTGTCGCCTCAGACACCTCTGCCGATTGACGTCAATTCTCCTCCCATTAACAATAATGGCAGCAGCTTGGTCGGTGGTGGCGGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAAGCTGTGGATGCGTCTCGACAGATGGGGGCAGTCGGAGCTTTTAGAGTGGGACAAGAACGCAATAATCCGGCGTGCTGCAATTCCGGCTCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCCAACATACTCGCAAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAGGAAACTACTTGCTACGAAGAGTTCATCTCAGGGCCATGGAGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGTGGAGGAAAGTGGTTGCCAGTCTCCGAAGCTGCTGAAGCTGCTGAAGGTGTGCCGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCATTGGAGGTTGTATGTATGTATTTAGATTCCAGTGTGGAAGACCTTGAGAGAGATGCTTATCCAGTGCTTGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGAAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAAAAGGTGCGGGACGAGATAGAGCATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAAGCTGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACAGCCATCGTTCCCCATCTTCGTCGACTTAGTTCCACCCGGAGCGGAAGTATGGTGACCAGCAATCTTCTTGATGATAATGATGTAGAGGATCTGGAAATGTTACTCGAGGCATATTTTATGCAGTTAGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTCAATATTCAACTTGACAACCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTCGCCATAGCCATTGAAACCTTAATCGCCGGGTTGTTTGGCATGAACATCCATTGTACATTGTACGATCGGGAGGGGATATTCGAGTACTTCGTCGGAGGTACTTCAGTAGGTTGTTTGTTGATTTTCGTGCTTATTTTCGGGTATGCTAAATGGAAGAAGCTTCTCGGTTCATGA 1371 46.46 MGKGPFSFRRSNSRRRPKKAAQSTPLLSPQTPLPIDVNSPPINNNGSSLVGGGGGGGGAVGKVKKKAGGAKLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLRKLLATKSSSQGHGDGTVDERENDVNVSSGGKWLPVSEAAEAAEGVPYELPFEFQVLENALEVVCMYLDSSVEDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQADALLGGLASNSTTAIVPHLRRLSSTRSGSMVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAIETLIAGLFGMNIHCTLYDREGIFEYFVGGTSVGCLLIFVLIFGYAKWKKLLGS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2868516 2874235 + CmoCh04G005750.1 Cmo04g00575 379550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00575 456 MobiDBLite consensus disorder prediction 1 62 - -
Cmo04g00575 456 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 456 - -
Cmo04g00575 456 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 456 IPR039204 -
Cmo04g00575 456 Coils Coil 254 288 - -
Cmo04g00575 456 Gene3D Magnesium transport protein CorA, transmembrane region 176 387 - -
Cmo04g00575 456 CDD Mrs2_Mfm1p-like 73 453 IPR039204 -
Cmo04g00575 456 Gene3D Magnesium transport protein CorA, transmembrane region 394 454 - -
Cmo04g00575 456 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 392 443 IPR045863 -
Cmo04g00575 456 MobiDBLite consensus disorder prediction 23 50 - -
Cmo04g00575 456 Pfam CorA-like Mg2+ transporter protein 256 447 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo04g00575 456 Gene3D - 61 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00575 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00575 Cmo-Chr4:2868516 Cmo17g00183 Cmo-Chr17:1083418 5.48E-107 dispersed
Cmo13g00275 Cmo-Chr13:2237131 Cmo04g00575 Cmo-Chr4:2868516 1.17E-20 dispersed
Cmo16g00423 Cmo-Chr16:1976093 Cmo04g00575 Cmo-Chr4:2868516 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G16010 84.1 4.0e-205 711.4
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.7e-203 704.9
Cmo12g00082 . 8 381 MRS2 Gene Family AT1G16010 53.7 7.4e-111 398.3
Cmo17g00183 CST 1 366 MRS2 Gene Family AT5G64560 79.3 7.7e-157 550.8
Cmo08g01086 CST 1 358 MRS2 Gene Family AT5G64560 79.3 1.1e-155 547.0
Cmo19g00057 . 1 353 MRS2 Gene Family AT5G64560 64.3 2.8e-114 409.5
Cmo11g01427 CST 39 498 MRS2 Gene Family AT3G19640 64.4 2.6e-149 526.2
Cmo19g00556 CST 14 539 MRS2 Gene Family AT3G19640 55.3 1.9e-139 493.4
Cmo04g00575 . 1 456 MRS2 Gene Family AT3G58970 62.5 1.5e-143 506.9
Cmo16g00423 CST 1 457 MRS2 Gene Family AT3G58970 58.3 1.8e-125 446.8
Cmo12g00082 . 9 381 MRS2 Gene Family AT2G03620 66.6 3.0e-133 472.6
Cmo14g01066 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cmo01g00196 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.7e-112 403.7
Cmo08g01086 CST 1 320 MRS2 Gene Family AT5G09690 77.5 1.1e-127 453.8
Cmo17g00183 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cmo19g00057 . 1 314 MRS2 Gene Family AT5G09690 62.0 1.9e-95 346.7
Cmo01g00196 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cmo14g01066 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.6e-78 288.9
Cmo08g01086 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.4e-89 327.0
Cmo17g00183 CST 23 288 MRS2 Gene Family AT5G09720 66.8 6.5e-87 318.2
Cmo19g00057 . 37 285 MRS2 Gene Family AT5G09720 58.6 1.4e-68 257.3
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G80900 82.6 8.6e-200 693.7
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G80900 81.7 4.0e-197 684.9
Cmo12g00082 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.2e-108 391.0
Cmo13g00275 . 114 453 MRS2 Gene Family AT5G22830 83.8 1.9e-157 553.1
Cmo12g00817 . 114 453 MRS2 Gene Family AT5G22830 81.8 5.3e-152 535.0
Cmo13g00277 . 114 257 MRS2 Gene Family AT5G22830 79.9 4.0e-59 226.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00575 Cmo_Chr04 FPKM 35.132442 37.49881 25.412926 31.660301 26.584734 23.452349 25.803299 32.030186 31.644648 33.205051