Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00575 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAATAGTCGTCGCCGCCCTAAGAAGGCAGCTCAGTCGACACCGTTGTTGTCGCCTCAGACACCTCTGCCGATTGACGTCAATTCTCCTCCCATTAACAATAATGGCAGCAGCTTGGTCGGTGGTGGCGGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAAGCTGTGGATGCGTCTCGACAGATGGGGGCAGTCGGAGCTTTTAGAGTGGGACAAGAACGCAATAATCCGGCGTGCTGCAATTCCGGCTCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCCAACATACTCGCAAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAGGAAACTACTTGCTACGAAGAGTTCATCTCAGGGCCATGGAGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGTGGAGGAAAGTGGTTGCCAGTCTCCGAAGCTGCTGAAGCTGCTGAAGGTGTGCCGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCATTGGAGGTTGTATGTATGTATTTAGATTCCAGTGTGGAAGACCTTGAGAGAGATGCTTATCCAGTGCTTGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGAAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAAAAGGTGCGGGACGAGATAGAGCATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAAGCTGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACAGCCATCGTTCCCCATCTTCGTCGACTTAGTTCCACCCGGAGCGGAAGTATGGTGACCAGCAATCTTCTTGATGATAATGATGTAGAGGATCTGGAAATGTTACTCGAGGCATATTTTATGCAGTTAGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTCAATATTCAACTTGACAACCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTCGCCATAGCCATTGAAACCTTAATCGCCGGGTTGTTTGGCATGAACATCCATTGTACATTGTACGATCGGGAGGGGATATTCGAGTACTTCGTCGGAGGTACTTCAGTAGGTTGTTTGTTGATTTTCGTGCTTATTTTCGGGTATGCTAAATGGAAGAAGCTTCTCGGTTCATGA 1371 46.46 MGKGPFSFRRSNSRRRPKKAAQSTPLLSPQTPLPIDVNSPPINNNGSSLVGGGGGGGGAVGKVKKKAGGAKLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLRKLLATKSSSQGHGDGTVDERENDVNVSSGGKWLPVSEAAEAAEGVPYELPFEFQVLENALEVVCMYLDSSVEDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQADALLGGLASNSTTAIVPHLRRLSSTRSGSMVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAIETLIAGLFGMNIHCTLYDREGIFEYFVGGTSVGCLLIFVLIFGYAKWKKLLGS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2868516 2874235 + CmoCh04G005750.1 Cmo04g00575 379550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00575 456 MobiDBLite consensus disorder prediction 1 62 - -
Cmo04g00575 456 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 456 - -
Cmo04g00575 456 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 456 IPR039204 -
Cmo04g00575 456 Coils Coil 254 288 - -
Cmo04g00575 456 Gene3D Magnesium transport protein CorA, transmembrane region 176 387 - -
Cmo04g00575 456 CDD Mrs2_Mfm1p-like 73 453 IPR039204 -
Cmo04g00575 456 Gene3D Magnesium transport protein CorA, transmembrane region 394 454 - -
Cmo04g00575 456 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 392 443 IPR045863 -
Cmo04g00575 456 MobiDBLite consensus disorder prediction 23 50 - -
Cmo04g00575 456 Pfam CorA-like Mg2+ transporter protein 256 447 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo04g00575 456 Gene3D - 61 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00575 Cmo-Chr4:2868516 Cmo17g00183 Cmo-Chr17:1083418 5.48E-107 dispersed
Cmo13g00275 Cmo-Chr13:2237131 Cmo04g00575 Cmo-Chr4:2868516 1.17E-20 dispersed
Cmo16g00423 Cmo-Chr16:1976093 Cmo04g00575 Cmo-Chr4:2868516 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00575 K16075 - csv:101203496 700.279