Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00577 ATGGTGATATTGAAAATGATATCACCATGCACAGACACAGACCTCCGTAATCTATTCGAAATTTCCCAAATCAAGGACTACAATACTTGGTCTAAGTGCGGTATGGAGAATCCGTTCTTTTCCGTTTTCCAAACAAACCCATGTTTGTTTCTGGATCAAAGATCAAATTTCATTGCCTGTCTTTTGATCTTCTTCTCTCTCACCTGCTCCTTCTCGCCCTCCTATGAATATGATTCCTTGGACCCTTATGCCAACGTTACTATCACATGGGATTTCTTGGTGGAGAATGGAGATACTTTTGATGTGAGAGTTTCGTTATACAATTTCCAACTGTTTCGTCATGTGGAACTTCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGAGTATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAAGGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATAGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAAAGGAGGTGTGCTATCTTCCATGAGACAAGACCCTGCAAACTATGGAGCTGCCTTCCAAATGAATATCGGGAAGTCTGCTGGGAAGGGTGTAGATAGCAAGATGCCTGCAAATTTCACTCTGGGGCTTCCTGGCTATACTTGTAGTGACCCATTTCAAGTCTCTCCAACCAAGTTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAACATGACATGTGTTTACTCGCAATTCCGATCATCACCAGCTCCGGGGTGCTGTGTTTCATTGTCGTCCTTCTATAACAGCACCATTGTTCCTTGCCCTCAGTGCAGCTGTGGCTGCCAAGGGATAGAGGGAACGAAATGCGTCGAGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGGTGACCAAAATCAGTCCCGTACAAATTGTGGCCATATGTGTACATTATAATGCATTAGAGTCGGCTTACTATATTATCAAGCTTTCACCATGA 1533 43.9 MVILKMISPCTDTDLRNLFEISQIKDYNTWSKCGMENPFFSVFQTNPCLFLDQRSNFIACLLIFFSLTCSFSPSYEYDSLDPYANVTITWDFLVENGDTFDVRVSLYNFQLFRHVELPGWKLGWSWKGDEVIWSMWGAEATQQGNCSKYIGKELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGAAFQMNIGKSAGKGVDSKMPANFTLGLPGYTCSDPFQVSPTKFSKDGGRRWTQVLETWNMTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGIEGTKCVESGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKVTKISPVQIVAICVHYNALESAYYIIKLSP 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2880815 2886768 - CmoCh04G005770.1 Cmo04g00577 379552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00577 510 PIRSF COBRA 49 496 IPR006918 GO:0010215|GO:0031225
Cmo04g00577 510 PANTHER COBRA-LIKE PROTEIN 6 65 476 - -
Cmo04g00577 510 Pfam COBRA-like protein 102 262 IPR006918 GO:0010215|GO:0031225
Cmo04g00577 510 PANTHER PROTEIN COBRA 65 476 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00577 Cmo-Chr4:2880815 Cmo11g00221 Cmo-Chr11:1105614 1.69E-166 dispersed
Cmo16g00909 Cmo-Chr16:5447441 Cmo04g00577 Cmo-Chr4:2880815 7.59E-29 dispersed
Cmo04g00577 Cmo-Chr4:2880815 Cmo14g01186 Cmo-Chr14:9952375 3.39E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00577 - - cmo:103496092 847.04