Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00577 ATGGTGATATTGAAAATGATATCACCATGCACAGACACAGACCTCCGTAATCTATTCGAAATTTCCCAAATCAAGGACTACAATACTTGGTCTAAGTGCGGTATGGAGAATCCGTTCTTTTCCGTTTTCCAAACAAACCCATGTTTGTTTCTGGATCAAAGATCAAATTTCATTGCCTGTCTTTTGATCTTCTTCTCTCTCACCTGCTCCTTCTCGCCCTCCTATGAATATGATTCCTTGGACCCTTATGCCAACGTTACTATCACATGGGATTTCTTGGTGGAGAATGGAGATACTTTTGATGTGAGAGTTTCGTTATACAATTTCCAACTGTTTCGTCATGTGGAACTTCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGAGTATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAAGGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATAGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAAAGGAGGTGTGCTATCTTCCATGAGACAAGACCCTGCAAACTATGGAGCTGCCTTCCAAATGAATATCGGGAAGTCTGCTGGGAAGGGTGTAGATAGCAAGATGCCTGCAAATTTCACTCTGGGGCTTCCTGGCTATACTTGTAGTGACCCATTTCAAGTCTCTCCAACCAAGTTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAACATGACATGTGTTTACTCGCAATTCCGATCATCACCAGCTCCGGGGTGCTGTGTTTCATTGTCGTCCTTCTATAACAGCACCATTGTTCCTTGCCCTCAGTGCAGCTGTGGCTGCCAAGGGATAGAGGGAACGAAATGCGTCGAGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGGTGACCAAAATCAGTCCCGTACAAATTGTGGCCATATGTGTACATTATAATGCATTAGAGTCGGCTTACTATATTATCAAGCTTTCACCATGA 1533 43.9 MVILKMISPCTDTDLRNLFEISQIKDYNTWSKCGMENPFFSVFQTNPCLFLDQRSNFIACLLIFFSLTCSFSPSYEYDSLDPYANVTITWDFLVENGDTFDVRVSLYNFQLFRHVELPGWKLGWSWKGDEVIWSMWGAEATQQGNCSKYIGKELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGAAFQMNIGKSAGKGVDSKMPANFTLGLPGYTCSDPFQVSPTKFSKDGGRRWTQVLETWNMTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGIEGTKCVESGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKVTKISPVQIVAICVHYNALESAYYIIKLSP 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2880815 2886768 - CmoCh04G005770.1 Cmo04g00577 379552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00577 510 PIRSF COBRA 49 496 IPR006918 GO:0010215|GO:0031225
Cmo04g00577 510 PANTHER COBRA-LIKE PROTEIN 6 65 476 - -
Cmo04g00577 510 Pfam COBRA-like protein 102 262 IPR006918 GO:0010215|GO:0031225
Cmo04g00577 510 PANTHER PROTEIN COBRA 65 476 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00577 - - - cmo:103496092 847.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00577 Cmo-Chr4:2880815 Cmo11g00221 Cmo-Chr11:1105614 1.69E-166 dispersed
Cmo16g00909 Cmo-Chr16:5447441 Cmo04g00577 Cmo-Chr4:2880815 7.59E-29 dispersed
Cmo04g00577 Cmo-Chr4:2880815 Cmo14g01186 Cmo-Chr14:9952375 3.39E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1128 . . . . . . . . . . . . . . Sed04g1592 Cpe01g00487 . Bhi01g01581 Tan01g0795 Cmetu06g2325 . Hepe07g0518 Mch10g0559 . Cla05g01018 Cam05g1111 Cec05g1122 Cco05g1112 Clacu05g1104 Cmu05g1053 Cre05g1127 Cone3ag0918 . . . . Csa03g01928 . Cme06g01212 Blo06g00983 . . . . . Bma05g00929 . . Cmo04g00577 . . . . . . . . . . . . . . . . . . . . . Lsi05g00155 . Chy06g01144 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g00221 CCT,CST,ECH 48 447 COBRA Gene Family AT5G60920 81.0 1.0e-210 729.9
Cmo10g00308 CCT,CST,ECH 48 447 COBRA Gene Family AT5G60920 80.3 4.2e-209 724.5
Cmo14g01186 CST 150 550 COBRA Gene Family AT5G60920 76.1 7.9e-200 693.7
Cmo01g00448 . 44 448 COBRA Gene Family AT5G60920 74.3 1.9e-193 672.5
Cmo01g00449 CST 31 426 COBRA Gene Family AT5G60920 69.2 1.8e-180 629.4
Cmo10g00306 CST 48 445 COBRA Gene Family AT5G60920 68.4 8.5e-178 620.5
Cmo11g00223 CST 55 450 COBRA Gene Family AT5G60920 68.0 4.2e-177 618.2
Cmo13g01107 CCT,ECH 19 381 COBRA Gene Family AT5G60920 59.9 3.4e-142 502.3
Cmo04g00577 . 88 473 COBRA Gene Family AT5G60920 55.0 1.1e-129 460.7
Cmo10g00308 CCT,CST,ECH 18 444 COBRA Gene Family AT3G02210 73.5 1.2e-204 709.9
Cmo11g00221 CCT,CST,ECH 18 452 COBRA Gene Family AT3G02210 72.9 1.0e-203 706.8
Cmo14g01186 CST 108 556 COBRA Gene Family AT3G02210 71.8 9.3e-202 700.3
Cmo01g00448 . 19 440 COBRA Gene Family AT3G02210 74.0 9.7e-199 690.3
Cmo01g00449 CST 5 429 COBRA Gene Family AT3G02210 66.7 3.5e-180 628.6
Cmo11g00223 CST 29 454 COBRA Gene Family AT3G02210 66.6 1.7e-179 626.3
Cmo10g00306 CST 20 448 COBRA Gene Family AT3G02210 66.1 3.8e-179 625.2
Cmo13g01107 CCT,ECH 5 402 COBRA Gene Family AT3G02210 56.9 2.5e-146 516.2
Cmo04g00577 . 62 473 COBRA Gene Family AT3G02210 54.3 9.5e-138 487.6
Cmo10g00308 CCT,CST,ECH 18 446 COBRA Gene Family AT3G29810 74.9 2.7e-201 698.7
Cmo11g00221 CCT,CST,ECH 18 446 COBRA Gene Family AT3G29810 73.3 2.7e-198 688.7
Cmo14g01186 CST 129 556 COBRA Gene Family AT3G29810 70.8 2.7e-193 672.2
Cmo01g00448 . 28 448 COBRA Gene Family AT3G29810 72.0 1.2e-190 663.3
Cmo01g00449 CST 14 428 COBRA Gene Family AT3G29810 67.0 7.0e-178 620.9
Cmo11g00223 CST 37 436 COBRA Gene Family AT3G29810 67.3 2.5e-175 612.5
Cmo10g00306 CST 31 429 COBRA Gene Family AT3G29810 66.9 1.8e-173 606.3
Cmo13g01107 CCT,ECH 7 381 COBRA Gene Family AT3G29810 57.2 1.5e-143 506.9
Cmo04g00577 . 70 467 COBRA Gene Family AT3G29810 55.6 1.3e-136 483.8
Cmo01g00449 CST 9 339 COBRA Gene Family AT5G15630 82.8 9.3e-178 620.2
Cmo10g00306 CST 32 356 COBRA Gene Family AT5G15630 84.0 2.7e-177 618.6
Cmo11g00223 CST 39 363 COBRA Gene Family AT5G15630 84.0 6.0e-177 617.5
Cmo11g00221 CCT,CST,ECH 31 361 COBRA Gene Family AT5G15630 74.4 1.1e-151 533.5
Cmo10g00308 CCT,CST,ECH 31 361 COBRA Gene Family AT5G15630 74.1 1.9e-151 532.7
Cmo14g01186 CST 138 466 COBRA Gene Family AT5G15630 67.8 2.5e-143 505.8
Cmo01g00448 . 32 358 COBRA Gene Family AT5G15630 67.6 9.1e-141 497.3
Cmo13g01107 CCT,ECH 5 309 COBRA Gene Family AT5G15630 58.9 7.7e-124 441.0
Cmo14g01186 CST 146 326 COBRA Gene Family AT5G60950 63.0 2.2e-65 246.1
Cmo10g00308 CCT,CST,ECH 18 224 COBRA Gene Family AT5G60950 58.2 3.7e-65 245.4
Cmo01g00448 . 40 220 COBRA Gene Family AT5G60950 61.9 9.2e-64 240.7
Cmo11g00221 CCT,CST,ECH 30 224 COBRA Gene Family AT5G60950 57.1 7.8e-63 237.7
Cmo01g00449 CST 8 207 COBRA Gene Family AT5G60950 55.2 3.4e-58 222.2
Cmo11g00223 CST 51 231 COBRA Gene Family AT5G60950 58.0 5.8e-58 221.5
Cmo10g00306 CST 44 224 COBRA Gene Family AT5G60950 56.4 3.2e-56 215.7
Cmo04g00577 . 61 470 COBRA Gene Family AT1G09790 59.6 3.7e-150 528.9
Cmo11g00223 CST 41 434 COBRA Gene Family AT1G09790 53.4 1.2e-132 470.7
Cmo10g00306 CST 36 427 COBRA Gene Family AT1G09790 53.9 4.5e-132 468.8
Cmo10g00308 CCT,CST,ECH 32 432 COBRA Gene Family AT1G09790 53.6 4.5e-132 468.8
Cmo11g00221 CCT,CST,ECH 20 432 COBRA Gene Family AT1G09790 52.0 1.0e-131 467.6
Cmo14g01186 CST 138 536 COBRA Gene Family AT1G09790 53.0 2.9e-131 466.1
Cmo01g00449 CST 3 410 COBRA Gene Family AT1G09790 51.6 5.5e-130 461.8
Cmo01g00448 . 16 428 COBRA Gene Family AT1G09790 51.2 1.6e-129 460.3
Cmo06g01549 . 38 635 COBRA Gene Family AT4G16120 66.6 4.2e-251 864.8
Cmo14g01635 . 35 627 COBRA Gene Family AT4G16120 66.8 1.5e-248 856.3
Cmo16g00909 CST 66 667 COBRA Gene Family AT4G16120 52.6 2.3e-201 699.5
Cmo04g01012 CST 79 676 COBRA Gene Family AT4G16120 52.5 7.7e-197 684.5
Cmo14g01635 . 15 634 COBRA Gene Family AT3G16860 62.6 3.4e-237 818.5
Cmo06g01549 . 13 647 COBRA Gene Family AT3G16860 61.3 2.9e-236 815.5
Cmo16g00909 CST 62 683 COBRA Gene Family AT3G16860 52.2 3.4e-197 685.6
Cmo04g01012 CST 79 673 COBRA Gene Family AT3G16860 51.3 6.9e-190 661.4
Cmo14g01635 . 13 634 COBRA Gene Family AT5G49270 61.2 2.6e-237 818.9
Cmo06g01549 . 16 647 COBRA Gene Family AT5G49270 59.6 2.5e-235 812.4
Cmo16g00909 CST 70 665 COBRA Gene Family AT5G49270 51.6 1.1e-198 690.6
Cmo04g01012 CST 79 676 COBRA Gene Family AT5G49270 50.5 4.9e-191 665.2
Cmo04g01012 CST 20 697 COBRA Gene Family AT3G20580 58.6 3.6e-242 835.1
Cmo16g00909 CST 60 677 COBRA Gene Family AT3G20580 60.4 1.1e-238 823.5
Cmo06g01549 . 34 634 COBRA Gene Family AT3G20580 55.7 1.7e-207 719.9
Cmo14g01635 . 31 627 COBRA Gene Family AT3G20580 55.3 2.3e-204 709.5
Cmo16g00909 CST 59 682 COBRA Gene Family AT4G27110 60.7 2.9e-236 815.5
Cmo04g01012 CST 73 698 COBRA Gene Family AT4G27110 61.3 4.2e-235 811.6
Cmo06g01549 . 31 657 COBRA Gene Family AT4G27110 52.0 9.9e-200 694.1
Cmo14g01635 . 28 627 COBRA Gene Family AT4G27110 52.0 4.0e-193 672.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010841 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00577 Cmo_Chr04 FPKM 66.698883 70.01429 59.7206 60.685108 72.585876 80.66571 76.917709 54.008198 54.624992 58.87302