Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00583 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAGGATAGCAAGGAAAGTCCGAGGGAGAGGCTGTCGAACAAGACCTCGTCCGACCTGCAGGTGGCAAGAGTGACTTCGTCGTCGAGGGAAGAAGCTTATCGATCTAAAGATCATCATGATGGTAATGATGTAAGAGTGACATTGATTAACAAGCAGGTGAATGGGTCGGGTCGATTGCAGAGTGAGATTTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGCTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCAAATTGCTGCAGGCTGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGTCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGATTCGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGGCTCGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTATTTGAGTACATGGAACACGATTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCACAGGTTAAATGTTACATGCAACAACTTTTGCGTGGACTTGATCATTGTCACAGTCACGGAGTTCTGCATCGTGATATAAAGGGTTCCAACCTTTTAATCGACAATAATGGCGTCTTGAAAATTGCAGACTTTGGTTTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCGCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCGCCTGAGCTTTTACTCGGTGCTACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAGCAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGCTGCCACATGCAACGATATTTAAGCCCCAACAGCCCTATAGACGCTGCGTTGCTGACACGTTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGATGTTACTCTCTATAGATCCTGCTGATCGTGGCTCTGCCGCTCTTTCCCTTAAAAGCGAATTTTTTTCAACGAAGCCACTTCCTTGTGATCCTTCGAGCTTGCCAAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCGGTAGGAAGCAAGGGACACCGACATGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCACCTGACGCCAATGCCGAGTTAGTCTCATCAATGCAGAAAAGACAATCCAATTCAAAGAGCCGGAGTGAAAAGTTTAATCCACACCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCATCACAAGGAGCAGAACGAACGGATTCTCAGGTGTGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCCGCTTGGGTAAAGGCTAGTAAGAACCCAGATGACGCTCCGAAAATCTCAACCGGGGCCGATACGTTCACAACTTCAGGACTAGTAGCACCTAGAAGAAGTATGCTGGGGGAGAAGTCTGACGCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAGGAAACCTCGGAATCATCGATGCTACCCGACCAGAAGTTCTCAAATCACAGTATCGTAGGCTCACACGACAAAGAGAGGTGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAAGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGTCATATCCAAGAAGCAGTAAGACGAGCTCGGCTCGACAAGGCCAAGGCACGAAAGGTTCAAGTTGACGGGAAACAGATGTCGACAAATTCATTATTCGTCTCTGGTCGTTAA 2106 46.72 MGCVCCKPSAIEDSKESPRERLSNKTSSDLQVARVTSSSREEAYRSKDHHDGNDVRVTLINKQVNGSGRLQSEIFERKREKMEHMAAQHPSMGRIPKAAEGDQIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIEMLLSIDPADRGSAALSLKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRHDLQRKDRESRAVPAPDANAELVSSMQKRQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERTDSQVCHPKKASHSGPLAQRAAWVKASKNPDDAPKISTGADTFTTSGLVAPRRSMLGEKSDASQGEVKKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERCSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKARKVQVDGKQMSTNSLFVSGR 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2911153 2916800 + CmoCh04G005830.1 Cmo04g00583 379558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00583 701 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00583 701 MobiDBLite consensus disorder prediction 445 537 - -
Cmo04g00583 701 PANTHER CELL DIVISION PROTEIN KINASE 1 683 - -
Cmo04g00583 701 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00583 701 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Cmo04g00583 701 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cmo04g00583 701 MobiDBLite consensus disorder prediction 8 52 - -
Cmo04g00583 701 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cmo04g00583 701 CDD STKc_CDK9_like 131 415 - -
Cmo04g00583 701 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cmo04g00583 701 PANTHER CYCLIN-DEPENDENT KINASE 1 683 - -
Cmo04g00583 701 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00583 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Cmo04g00583 701 MobiDBLite consensus disorder prediction 445 471 - -
Cmo04g00583 701 MobiDBLite consensus disorder prediction 24 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00583 Cmo16g00430 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00886 Cmo-Chr1:4835903 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo02g00098 Cmo-Chr2:523545 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo04g00583 Cmo-Chr4:2911153 Cmo20g00222 Cmo-Chr20:1063611 6.74E-144 dispersed
Cmo18g00235 Cmo-Chr18:1536998 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo20g00223 Cmo-Chr20:1073241 Cmo04g00583 Cmo-Chr4:2911153 7.11E-09 dispersed
Cmo04g02055 Cmo-Chr4:11482638 Cmo04g00583 Cmo-Chr4:2911153 0 transposed
Cmo06g00920 Cmo-Chr6:6618306 Cmo04g00583 Cmo-Chr4:2911153 0 transposed
Cmo16g00430 Cmo-Chr16:2044031 Cmo04g00583 Cmo-Chr4:2911153 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74237 PF00069 Pkinase 1.90E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00583 - - csv:101222182 1323.92