Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00611 ATGATTATCGATCGAGGAATTCCACGCGCAAATTCTGAAATTTGGACTCTGTTCGTGTTACTGTTTGCTTCTTTTCGCGTTTGGCCGGCTGAGAAAACCACGAGTCAGAACTGGCGGAGACTTGTTGTGGTCAAGAGATTTGATTCGTTGGATCAGAAATTGAACAATACAGAGGGTGTGATGACTTGTTTCTGTTTTTGTTCAAGAAGAAACAGAGATTCGTTGACTTCCCATACAGCAGCTGCAGAAGCAGCAGCAATCGAAGAGATTTCAAAAATTCCGAACGTTCGCTTGTACTCTTACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGATTTGAAAACAAACTTGGACAGGGAGGCTTTGGATCTGTTTACAAGGGAAGGCTCAGAAATGGAACTCTTGCTGCCATAAAGGTACTATCCATGGACTCAAGCCAAGGAACACGGGAGTTTTTGGCAGAAATCAATGTGATTACGGTTATAAACCATGATAACCTGGTTAAGTTGCATGGTTGTTGTGTGGAAGGGCAGCACCGGATTTTGGTCTATCCTTACCTGGAAAATGGCAGCCTTGATAAGATGCTTTTTGGTAGAGGACGAGGAAATATCCAATTCAATTGGCAAACGAGGTGTAAAATATGCATTGGCATTGCACAGGGGCTCACGTTCCTTCATGAGGAAGTTCAGCCCCATGTTGTTCACAGGGACATCAAAGCAAGCAATATCCTGCTTGATAAGGACTTAACTGCAAAAATTTCTGATTTTGGTCTTGCTAGATTACTCCCGTCTCACATGACCCACGTCAGTACATGTATTGCTGGGACAGAAGGTTATCTTGCACCTGAATATGCCATCCGGGGGCAAGCGACAAGAAGAACAGATGTTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTATGTGGGAGGTACAACATAAACAAACGGTTGCCTGCTGAGGAACCATATCTTCTAGAAATGGTGTGGAAGCATCACGAGACAGGGCAATTGCTGGAATTGGTAGACATATCATTACATGGAGACTTTGTGGCTGAAGAGGCTTGCAGATATTTAAAAGTTGGTCTTCTCTGCACTCAAGATATGCCAACGCTCCGGCCATCTATGTCGACCGTCGTCAAGATGCTAACGGGTGACATTGATATAACTGATCAAACAATATCTAGACCTGGAATGCTTTCAGAGTTCATGCTTCCAAAAGATGTACTAGGCAAGAAAGCCGAGCCCAATTCGAAGCTTACATCGACGACTGAAGACTCGGGAAAGCAAAGTGAATCAACTTCATCGTCAGGGTTCATGGACACCTCGTACGGTACCATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 1371 43.33 MIIDRGIPRANSEIWTLFVLLFASFRVWPAEKTTSQNWRRLVVVKRFDSLDQKLNNTEGVMTCFCFCSRRNRDSLTSHTAAAEAAAIEEISKIPNVRLYSYEELRKATENFRFENKLGQGGFGSVYKGRLRNGTLAAIKVLSMDSSQGTREFLAEINVITVINHDNLVKLHGCCVEGQHRILVYPYLENGSLDKMLFGRGRGNIQFNWQTRCKICIGIAQGLTFLHEEVQPHVVHRDIKASNILLDKDLTAKISDFGLARLLPSHMTHVSTCIAGTEGYLAPEYAIRGQATRRTDVYSFGVLLLEIVCGRYNINKRLPAEEPYLLEMVWKHHETGQLLELVDISLHGDFVAEEACRYLKVGLLCTQDMPTLRPSMSTVVKMLTGDIDITDQTISRPGMLSEFMLPKDVLGKKAEPNSKLTSTTEDSGKQSESTSSSGFMDTSYGTITFNSIFDRSN 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3037463 3043204 - CmoCh04G006110.1 Cmo04g00611 379586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00611 456 ProSitePatterns Protein kinases ATP-binding region signature. 117 139 IPR017441 GO:0005524
Cmo04g00611 456 ProSiteProfiles Protein kinase domain profile. 111 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00611 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Cmo04g00611 456 CDD STKc_IRAK 117 384 - -
Cmo04g00611 456 SUPERFAMILY Protein kinase-like (PK-like) 92 382 IPR011009 -
Cmo04g00611 456 SMART serkin_6 111 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00611 456 MobiDBLite consensus disorder prediction 413 438 - -
Cmo04g00611 456 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 96 443 - -
Cmo04g00611 456 Pfam Protein tyrosine and serine/threonine kinase 112 329 IPR001245 GO:0004672|GO:0006468
Cmo04g00611 456 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 96 443 - -
Cmo04g00611 456 MobiDBLite consensus disorder prediction 415 438 - -
Cmo04g00611 456 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
Cmo04g00611 456 Gene3D Transferase(Phosphotransferase) domain 1 187 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00611 Cmo16g00508 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00611 Cmo-Chr4:3037463 Cmo16g00508 Cmo-Chr16:2450461 9.83E-156 dispersed
Cmo04g00611 Cmo-Chr4:3037463 Cmo04g00679 Cmo-Chr4:3370962 1.59E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74238 PF07714 PK_Tyr_Ser-Thr 1.50E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00611 - - bhj:120074245 671.389