Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00614 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCAAAGTCGTTGTATAGAGTTCCAAATGGTGTAGGAGATGGAATTCTTCGAGTTGCTTCGTCGGAGGTCGAAGATGGCTCTGGTCAGCCCAGCGGCGGTCGGATGCAACCTGAATCTGCTTGGTCCTCCATGCTACCGGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTTCTGAGGATAGTTGGCCTAACCGCCAGAACGTTGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAGGAGGTCGCCAGGGCCGCCCCTCTTTCCGGGAAAATTACTTTCCCTTCCTGCCTCAAACAGCCTGGACCATGCGATCCTCCGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTGCACCATTAATGGAGGAATTTGTGTATGTGGTATTAGCTGATTATGCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCTCGAAGATATAGGCATGGATCTCATACTGAGTATATAATATCTCTTGATGGTGAAGACCTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGTACCAATTTTACAATTTATGATAGCCAGCCACCACATAACGGTGCAAAGCCATCGAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCGGGGAATTTTGAAATTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTGAAGTGCCCAGTATCAGAAGACACTGGCACCAGCAAACCTTATGAGGACTCGAAGATGAAGAAATCCGAGTCCTTTTCTCCTTCATCTGGGTCGACAATCTTAAGAAACAAGGCCCCTAGATGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACGGTAGCATCCGTTAAAAACTTTCAACTTGTCGCTGCTGTTGACCATAGCCAGCCAGGAGTTAAAGGGGACGAAGAAACAGTCCTCCTACAGTTCGGAAAGGTAGGCGACGACACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCATGCGAGTAG 1191 46.94 MSLRRSFLSRRFSSKSLYRVPNGVGDGILRVASSEVEDGSGQPSGGRMQPESAWSSMLPELLREIIQRVEASEDSWPNRQNVVSCACVCKRWRDITKEVARAAPLSGKITFPSCLKQPGPCDPPHQCLIKRNKKTSTFYLYLALAPLMEEFVYVVLADYAFTDKGKFLLAARRYRHGSHTEYIISLDGEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEIGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPYEDSKMKKSESFSPSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAVDHSQPGVKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3057913 3063135 + CmoCh04G006140.1 Cmo04g00614 379589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00614 396 MobiDBLite consensus disorder prediction 276 303 - -
Cmo04g00614 396 ProSitePatterns Tub family signature 2. 381 396 IPR018066 -
Cmo04g00614 396 PANTHER TUBBY-RELATED 1 396 - -
Cmo04g00614 396 SUPERFAMILY Tubby C-terminal domain-like 104 396 IPR025659 -
Cmo04g00614 396 ProSitePatterns Tub family signature 1. 324 337 IPR018066 -
Cmo04g00614 396 Pfam F-box domain 54 98 IPR001810 GO:0005515
Cmo04g00614 396 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 324 340 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 182 198 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 374 396 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 306 323 IPR000007 -
Cmo04g00614 396 PRINTS Tubby superfamily signature 353 372 IPR000007 -
Cmo04g00614 396 MobiDBLite consensus disorder prediction 216 235 - -
Cmo04g00614 396 Gene3D Tubby Protein; Chain A 110 396 IPR025659 -
Cmo04g00614 396 Pfam Tub family 115 391 IPR000007 -
Cmo04g00614 396 Gene3D - 48 100 - -
Cmo04g00614 396 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Cmo04g00614 396 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00614 Cmo16g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00614 Cmo-Chr4:3057913 Cmo16g00475 Cmo-Chr16:2271385 0 dispersed
Cmo04g00614 Cmo-Chr4:3057913 Cmo08g01177 Cmo-Chr8:7495224 9.94E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9542 PF01167 Tub 7.00E-99 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00614 K19600 - csv:101211968 622.854