Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00618 ATGACCGAGCCCAAGCCCGATTCCGATCACCTATCTCCGTTTTTCCCTAAATCTCATCGTTCCGGTGCCGACGACCGGAACCCAATTATGGATTTCGATCTCGATTTGGATATTCCTTGGCCGTTGGATCAAACCCCTTTGTTTTCAACTTCCGATCATCTTGCTTCGCCTCTTTGGGCCTTCTCTGAAGCCGATGATGGCGAGGATTCCAAATTTGCTGCCTATGCTTGCTCTGTTCTTGGTGAGCTTCGATTCTGTTTTGCATATATGATTCCGTATGGCGTTTCTGGATGCTACTTTTCTGTCAGTTCCAATCTTCTGAGAGCAGGTACTTCCAATTTGAATTCGGTACCGCAAAAGCCGATCGAGAATCACAAGTTTAAGATTCTTCCCGTTCCGTCCGAGAATCCAGATGGGTATTGCTTGATCAAGGAAAAAATGGCGCAAGCTCTTCGGTACATTAAGGATTTGTCCGACCAGCAAGTTCTAGCTCAGGTTTGGGCACCTGTAAAGAATGGTGACAAGGTTGTACTTTCGACTTCCGGGCAACCGTTTGTTCTTGATACGCAGAGCAACGGGCTTCATCGGTATAGGTTGGTCTCTTTGACGTATATGTTCTCTTTGGACACTGAGTTGGATGGATCTCTCGGTCTCCCTGGTCGTGTTTTTCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCGAGCAAGGAGTATTCACGACTTAGGCATGCTCTTGATTATAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCGGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACTTCACCGAGGATCAATTATGCACCTGAGGTGGACAAAGTCTGTAAAGCTCTGCAGGCTGTTAATCTAAAAAGTTCAGAGATTTTGGATCGTCCGAATATCCAGGTCACTTTTGCATTCCGAAAGATGAATATTATTTGCAACGAAGGCCGACAGAATGCGCTGGCTGAAATCTTGGCCGTACTCACCGTTGTTTGTGAAACCCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGGCGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACAAGTGGGGATTTCGCGAGGCGTGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCGGGGAGAGCGTTTTCGTCTCACAGCTCGTGTTTTTGTGGAGACATCACTCAATTCTGCAAGAACGAATACCCTTTGGTACACTACGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCAAGTTTACTGGAGACGACGAGTACATTCTTGAATTCTTTCTGCCACCGAGCCTCGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCAATGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCCTCTGGAATCAAACTTGAGGAAGGAGGAATTGTCGAAGTCGTTCAAGCATCAAGAAACGGAGGGTTCGAATCAAGACTTGAATGTATTCATATTCCACCCGAGTCTGATGCCATGCCGAACACGGGAGAGGTAGCTGCCTTAGAAACATTACAACAACGTTCTTTAATGGTTCACGATGCCCCAAAGGACGAAAACAATACTGTTCGGGACAGGGAAAGCGACAACCCCGTTCCTTGTGTCCAGAATAAGGAAGTGAAAAAAACGTCCAAAAGGAAGCGCGGAAAAGCCGAGAAGTCGATTAGTCTGGACGTTCTTCAACAATATTTTGCTGGTAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCGACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGAAAGATCAATAAGGTGAATCGCTCTCTTTCAAAGCTAAAACGCGTCATCGATTCCGTTCAAGGGAATGAAGGAACTTTTGGAATGTCTTCTCTTGCTACAAGTCCACTTCCTGTTGCAGTTAGTTCGAGTTCTCATCCGTTAACTCCGGACGGGTCGAATCAAAATTTTTTTTTTGCTTCTCAACCCTCTGATCCTCAACGTAAAGAAACAAACACCTCAGAAGCACAGACAAACAACACACAGGCTAGACTGAAAGATCAATTACTCAGGGGAGTGTCGAACCCGGAAGAACTGTTTCACGAGCAGAATGGATCTCTAATGAAGCTCGGAAATGGCTTCAACAATTTTAGAACAGGAAGCGGATCTCGGGACGAGAGCACCGGGACACCTACATCTCATGGTTCTTGCCAAGGTAGTCCTGCAAATGAGAGTAATCCCCTTTCTATTCACCACCAAGAACAATGTGTAAGAAGAGGCTCTCCTGAAGCAGCAGCCTTCCATCCAATCGACAAACCGAACACATCGACACGTGCTTGTCCAGTTCCCGATACGCTTCTGATGGTTGAGCCGAAGGAACCGTTTGGAGGGATGCTGATTAAGGATGCAGGAAGCTCTAAGGACTTGAAGAATCTTTGCGCTTCGGTTGCCGATGCGGTTCTCGACGATCAAGTACCCAAATTTTGTTGGCCCAGACCTTCTGATATAGCTATGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTCATATATCAGCGAGGCAAGAACCAAGTAGAATGACTATCAAGGCCACTTATAAGGACGATATCATTCGGTTTCAAATTTCCACGTGTACCGGTATTGTGGAGTTACAAGAGGAAGTAGCAAAGAGATTGAAACTAGACATCGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTACTGCTTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAAGCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCAATCTTGGGAGTTCTTGTGAGAGTACTAGGGAGTGA 3015 45.67 MTEPKPDSDHLSPFFPKSHRSGADDRNPIMDFDLDLDIPWPLDQTPLFSTSDHLASPLWAFSEADDGEDSKFAAYACSVLGELRFCFAYMIPYGVSGCYFSVSSNLLRAGTSNLNSVPQKPIENHKFKILPVPSENPDGYCLIKEKMAQALRYIKDLSDQQVLAQVWAPVKNGDKVVLSTSGQPFVLDTQSNGLHRYRLVSLTYMFSLDTELDGSLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLRHALDYNVQGTLALPVFDPSGQSCLGVLELIMTSPRINYAPEVDKVCKALQAVNLKSSEILDRPNIQVTFAFRKMNIICNEGRQNALAEILAVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHKWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKNEYPLVHYALMFGLKSCFSICLRSKFTGDDEYILEFFLPPSLVDYQEQKTLLGAMMATMKQHFYTLKVASGIKLEEGGIVEVVQASRNGGFESRLECIHIPPESDAMPNTGEVAALETLQQRSLMVHDAPKDENNTVRDRESDNPVPCVQNKEVKKTSKRKRGKAEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIDSVQGNEGTFGMSSLATSPLPVAVSSSSHPLTPDGSNQNFFFASQPSDPQRKETNTSEAQTNNTQARLKDQLLRGVSNPEELFHEQNGSLMKLGNGFNNFRTGSGSRDESTGTPTSHGSCQGSPANESNPLSIHHQEQCVRRGSPEAAAFHPIDKPNTSTRACPVPDTLLMVEPKEPFGGMLIKDAGSSKDLKNLCASVADAVLDDQVPKFCWPRPSDIAMRQPMESVCHTVPHISARQEPSRMTIKATYKDDIIRFQISTCTGIVELQEEVAKRLKLDIGTFDIKYMDDDREWVLTACDADLQECVDISKASGSNIIRLLVHDLSVNLGSSCESTRE 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3076828 3080885 + CmoCh04G006180.1 Cmo04g00618 379593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00618 1004 ProSiteProfiles RWP-RK domain profile. 594 675 IPR003035 -
Cmo04g00618 1004 Pfam PB1 domain 910 990 IPR000270 GO:0005515
Cmo04g00618 1004 SMART PB1_new 909 991 IPR000270 GO:0005515
Cmo04g00618 1004 Gene3D - 907 992 - -
Cmo04g00618 1004 MobiDBLite consensus disorder prediction 1 23 - -
Cmo04g00618 1004 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 109 1002 - -
Cmo04g00618 1004 MobiDBLite consensus disorder prediction 687 731 - -
Cmo04g00618 1004 SUPERFAMILY CAD & PB1 domains 902 992 - -
Cmo04g00618 1004 Pfam RWP-RK domain 608 655 IPR003035 -
Cmo04g00618 1004 MobiDBLite consensus disorder prediction 762 828 - -
Cmo04g00618 1004 MobiDBLite consensus disorder prediction 762 801 - -
Cmo04g00618 1004 ProSiteProfiles PB1 domain profile. 909 991 IPR000270 GO:0005515
Cmo04g00618 1004 MobiDBLite consensus disorder prediction 572 604 - -
Cmo04g00618 1004 CDD PB1_NLP 910 990 IPR034891 -
Cmo04g00618 1004 PANTHER PROTEIN NLP8 109 1002 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00618 - - - csv:101212500 1605.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00618 Cmo-Chr4:3076828 Cmo09g00055 Cmo-Chr9:241552 3.39E-12 dispersed
Cmo18g01356 Cmo-Chr18:12775025 Cmo04g00618 Cmo-Chr4:3076828 1.21E-08 dispersed
Cmo16g00577 Cmo-Chr16:2791791 Cmo04g00618 Cmo-Chr4:3076828 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00577 CST 186 994 NLP Transcription Factor Family AT1G64530 50.4 9.5e-214 740.7
Cmo04g00618 . 198 1004 NLP Transcription Factor Family AT1G64530 50.6 1.1e-206 717.2
Cmo16g00577 CST 265 994 NLP Transcription Factor Family AT4G24020 54.9 8.8e-204 707.6
Cmo04g00618 . 277 1004 NLP Transcription Factor Family AT4G24020 52.6 4.1e-193 672.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9543 PF00564 PB1 6.90E-16 CL0072 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00618 Cmo_Chr04 FPKM 28.794508 30.668346 37.204041 35.955364 21.657564 22.083384 21.993917 39.798103 39.311546 39.751568