Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00625 ATGGGCGTCTGTCTGGTCAAATTTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTCTGGCAATCAATAAAAGCACTGGCCTCACCTCTGATGGTGAGGCACTTCTAAGCTTTAGGATGGCAGTTTCCAGTTCTGACGGTGTCATCTTTCAGTGGAGACCAGAGGATCCAAATCCTTGTAACTGGACTGGAGTGGTCTGTGATTCAAAAACGAAGCGAGTTATCTCTTTGAAGCTTGGAAGTCACAAGCTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTAAAGACCCTAATTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCTTTGAGCTGGGAAACCTTTCTGAGTTGGAAATGTTAGATGTTTCAAGCAACTCACTTAGTGGAAATATTCCAACATCCCTCGGGAATTTGGATAAGCTCGCTATTCTCAATGTGTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGTCTTCCTTTGTTGGAAATCGTGGTTTATGTGGCAAACAAGTTAGTGTCACTTGCAAAGACAACAACACTGGATCTGGATCAAATTCTGAATCCCCAGGCTCAGGCCAAAATCAAATGAGGAAGAAGTACTCTGGTCGACTACTCATAAGTGCATCAGCTACGGTGGGGGCACTACTACTTGTTGCTCTCATGTGTTTCTGGGGCTCCTTTCTTTTTAAAAGATTTGGAAGAAATGAAAAGAAGGGTCTTGCAAAGAATGTCGGTGGAGGCGCATCAGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATGAAGAAGTTGGAAACCTTGAATGAGGAACACATCATCGGCTCTGGGGGTTTTGGAACAGTTTACAGACTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTCGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGCTTAAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAATTCTCCCACATCGAAATTGTTGATTTATGATTACCTATCTGGGGGCAGCCTTGATGAGGCCCTTCATGAAAGATCCGAGCCATTAGATTGGGACACACGCTTGAATATTATATTTGGAGCAGCAAAAGGGCTTGCCTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCGAGCAACATATTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCTAAGCTTCTGGACGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATACATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTCCTGGTACTTGAAGTACTGAGTGGAAAACGACCGACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTCTCACGGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGACAGAAACTCTTGACGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGGCCGACCATGCACCGAGTCGTCCAGTTCTTTGAGTCTGAGTTTTTGAGAAGCACAAAGCATGGTGGAGTTCGTTTCATTGCAGAAGTAGTACCAACATCCAGGTGTGGTCTGTCTCTCTCTCTCTCTCGATTTCACTTATGCTGCCTGCTATTCATTATAGATAAATTAGAAGCTGCTCTCTACCATTGCCATCCATTTGTTCTTCTCTTGTGA 1914 42.58 MGVCLVKFSGLLVLHVLLLCLAINKSTGLTSDGEALLSFRMAVSSSDGVIFQWRPEDPNPCNWTGVVCDSKTKRVISLKLGSHKLSGFIAPELGKLDQLKTLILSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPFELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSESSFVGNRGLCGKQVSVTCKDNNTGSGSNSESPGSGQNQMRKKYSGRLLISASATVGALLLVALMCFWGSFLFKRFGRNEKKGLAKNVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEPLDWDTRLNIIFGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLLTENRQREIVDSQCEGVQTETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEFLRSTKHGGVRFIAEVVPTSRCGLSLSLSRFHLCCLLFIIDKLEAALYHCHPFVLLL 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3105407 3111511 - CmoCh04G006250.1 Cmo04g00625 379600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00625 637 Gene3D Phosphorylase Kinase; domain 1 282 385 - -
Cmo04g00625 637 SUPERFAMILY L domain-like 29 189 - -
Cmo04g00625 637 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cmo04g00625 637 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Cmo04g00625 637 PANTHER RECEPTOR-LIKE PROTEIN 55 3 582 - -
Cmo04g00625 637 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00625 637 Gene3D Transferase(Phosphotransferase) domain 1 386 587 - -
Cmo04g00625 637 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Cmo04g00625 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Cmo04g00625 637 SMART serkin_6 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00625 637 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cmo04g00625 637 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 582 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cmo04g00625 637 SUPERFAMILY Protein kinase-like (PK-like) 292 577 IPR011009 -
Cmo04g00625 637 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01399 Cmo-Chr1:11005838 Cmo04g00625 Cmo-Chr4:3105407 0 dispersed
Cmo04g00625 Cmo-Chr4:3105407 Cmo18g00100 Cmo-Chr18:681892 0 dispersed
Cmo09g00666 Cmo-Chr9:3333911 Cmo04g00625 Cmo-Chr4:3105407 8.48E-101 dispersed
Cmo04g00625 Cmo-Chr4:3105407 Cmo09g00742 Cmo-Chr9:3721073 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74239 PF00069 Pkinase 9.70E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00625 - - csv:101205992 1091.64