Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00637 ATGGGATCCAGCGGGAGTAAACCGTCGAGCAGTTCGCTGCCGTCGCCGCCGCCGTCTTCATCGTCGTTGGCGGCGACTCTGTCGAGTTCCGGGAGAATCCGGAGGAGGAGATCCAAAGGCCGGAGAGTTTTCCAGTGTTCTTGCCTTGGGACGCTCTCTGGATCGCACCATAGCGACAATGACGATAATGATTGTGAAAGTGATAACAAAAAGAATGCTCATTATTGTTCATCTGCAAATCATACTGCTCAAGCATTAGATCAGAAGAAAATTGAGGGTTACAGAAGGGTCAAAGCTGAGGAGTCTGTTGAAGCACCTTGCGTAACGTCGAATGTTGAACTTGATGGATGGGATCAGACCGGTGGTGCTGTTATTGCCCCTAGAGCTGGTAGTACTTCTTCCCATGCAACCTCCCTCGAACCGTTGAAGTCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCGTTCCCGGTAATGTAAGCTTCAGACTGAGTAGAGCAAGCAGGTTAGGATCATCTAGATCTTATCCTTTGTCTTCAACTAATCTCTCAATGTTGAATGACGAAGACGGGCTTCGTTTGTCGAATGGACCTGTCGGAGGCTTGGATGATCGAGATGAAATGCAGCAAGGTAGGGACTCGCTTCCTGCATCCTTAGCTAGTGCAACTCATACTGAGTATCATGGAGATGGTCCTTCTAATTTTAGGCTAAATACACTACCTTCTGATCTTTCTACTAACTTACAAGACAATCAGGCAGTTTCTTCTACCCACGATGTGGCTCGTGATAATGCACAAGTAGAGCCTGATGGTAACGTTTCCCATCCTCGAAATCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGATAGACAGACTGGATCTAGGGAACCAGTTGAACAGAATTTTCGTTTCAGTCGGACCCTTAGCGTTGGAAGACTCCGTGATAGGGTTCTTCGTAGATCATCGTTATCTGACTTCACATTGTGTCCTCAGCAACAAGAGGGAGAGGAGAGAGATGCTAGTCAGAGTGGCGATGACCGACATGTTCGGACTGCTGAGACAAGGGCTTCATCATCTGAAGATAATGCTATGACCTCTCCAACAACGTCAGGTTATCCAGCTTCTAGTCTATCTAGTTCCCTGTTTAGCACCCAAGATAATGAAATGGAAACCACTCGGCCTCGAGAAGCTAGATATCACGATTTGCTCGAACACCGGTCAAATTTCCTTGAACGGAGAAGACGAATACGTTCCCAGGTTCGTGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCACGAGAGATCGTGTATATTATCTGGTCAACATAGGACCAGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATGTAAATGATAACACTGATGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTCTTATCGTCCCGTCCTGCATCTTCGATTGGCTCTCTGCCTGCTCCGAACGATGTTGTAGATTCTATGCCCGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAACGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGATGAAGGAGACAGCATGAGAGTGTTGCCTTGCCATCATGAGTTTCACACAGCGTGTGTCGATAAGTGGCTGAAGGAAATCCACAGGGTATGCCCCCTCTGTCGAGGTGACATATGCAGCAGCAGATCGGATGCGTTACCAGACGATGTCACGTGA 1788 46.53 MGSSGSKPSSSSLPSPPPSSSSLAATLSSSGRIRRRRSKGRRVFQCSCLGTLSGSHHSDNDDNDCESDNKKNAHYCSSANHTAQALDQKKIEGYRRVKAEESVEAPCVTSNVELDGWDQTGGAVIAPRAGSTSSHATSLEPLKSSSNFLSRFSFVPGNVSFRLSRASRLGSSRSYPLSSTNLSMLNDEDGLRLSNGPVGGLDDRDEMQQGRDSLPASLASATHTEYHGDGPSNFRLNTLPSDLSTNLQDNQAVSSTHDVARDNAQVEPDGNVSHPRNLPENESSEIRQSDRQTGSREPVEQNFRFSRTLSVGRLRDRVLRRSSLSDFTLCPQQQEGEERDASQSGDDRHVRTAETRASSSEDNAMTSPTTSGYPASSLSSSLFSTQDNEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTSHCTCRINNRDTNVNDNTDARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSMPVKFYSKLQKHQNEEAAQCYICLVEYDEGDSMRVLPCHHEFHTACVDKWLKEIHRVCPLCRGDICSSRSDALPDDVT 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3150021 3153327 + CmoCh04G006370.1 Cmo04g00637 379612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00637 595 MobiDBLite consensus disorder prediction 170 246 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 329 394 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 339 356 - -
Cmo04g00637 595 SUPERFAMILY RING/U-box 515 585 - -
Cmo04g00637 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 584 IPR013083 -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 1 70 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 170 188 - -
Cmo04g00637 595 Pfam Ring finger domain 536 579 IPR001841 -
Cmo04g00637 595 ProSiteProfiles Zinc finger RING-type profile. 537 579 IPR001841 -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 280 294 - -
Cmo04g00637 595 SMART ring_2 537 578 IPR001841 -
Cmo04g00637 595 CDD RING-H2_PA-TM-RING 536 579 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 357 389 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g00637 595 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 587 - -
Cmo04g00637 595 MobiDBLite consensus disorder prediction 265 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00708 Cmo-Chr3:6139550 Cmo04g00637 Cmo-Chr4:3150021 2.75E-13 dispersed
Cmo04g00637 Cmo-Chr4:3150021 Cmo10g00532 Cmo-Chr10:2408983 1.84E-47 dispersed
Cmo16g00558 Cmo-Chr16:2721042 Cmo04g00637 Cmo-Chr4:3150021 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00637 - - cmax:111479412 1038.1