Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00643 ATGTTCTTCCCTTTCATCCTCGCCGCCGCCGCCATCTTCTTCTTCTTCCGTTCTCTTTTCAAATTCTCCGCCCCTGTTCGTCGGAAACCTCCTCTTCCACCGGGCTCAATGGGCTGGCCTTACATCGGTGAAACCCTCCAACTCTACTCTCAAGATCCCAACGTCTTCTTTGCCTCCAAGAAGAAGAGATATGGTCCAATTTTCAAGTCCCACATATTGGGTTATCCTTGTGTGATGCTTTCAAGTCCCGAAGCTGTGAAATTTGTGTTGGTTACTAAAGCCCATCTCTTTAAGCCGACATTCCCAGCTAGTAAAGAAAGAATGTTGGGAAAAAATGGCATCTTTTTTCACCAAGGTGAGTATCATGCCAAATTGAGGCGCCTCGTCCTCCGAACATTCATGCCTGAGTCCATAAAAAACATCGTACCCACCATCGAATCCATCGCTAAGAACACCCTACAATCATGGAATGGACAATTGATCAACACCTTCCAAGAAATGAAAATGTTCGCATTCGAGGTTTCGTTGCTATCAATATTTGGAAAAGATGAAGCTCTTTACTTCGAAGATCTTAAACGATGCTATTACATTCTTGAAAAAGGGTACAATTCGATGCCCATAAACTTGCCAAGAACACTCTTCCACGAGGCCATGAAAGCTAGGAAGGATCTAGCGCGTATCTTAAACAAGATCCTCACAACCAGGAGGGAAACGCAGCGGGATTACAACGACCTCCTCGGATCATTCATGAGCGAAAAGGAAGGCCTCACCGACGAACAGATAGCCGACAATGTCATCGGCATCATCTTCGCAGCTCGCGACACGACAGCGAGTGTTCTAACATGGATCTTGAAGTTCCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTTACCGATGAACAAGAAGCAATAATGAATGAAAAACAGAGTAGAGAAGATAATAATCTCACCTGGGGTGACACGAAAAACATGCCGATTACTTCAAGGGTGATTCAAGAAACTCTAAGAGTTGCTTCGGTTTTGTCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATATGACGGGTATTTGATTCCAAAGGGATGGAAAGTTTTGCCTCTGTTTAGGAACATTCATCGTAGCTCTGAGAATTTTGCTCAGCCTGACAAGTTTGATCCTTCGAGATTTGAGGTGGCTCAAAAACCCAATACTTACATGCCATTTGGCAATGGGACCCACTCCTGTCCGGGAAATGAATTGGCCAAGCTGGAGATGTTGGTTTTACTCCATCATTTAACCACAAACTACAGGTGGAATGTAGTGGGAGCTGAAGAAGGGATTCAATATGGTCCATTTGCTCTTCCCCACAACGGATTGCCCATTAGAATATCTCTCAAAAAATAA 1386 44.08 MFFPFILAAAAIFFFFRSLFKFSAPVRRKPPLPPGSMGWPYIGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMLSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNGIFFHQGEYHAKLRRLVLRTFMPESIKNIVPTIESIAKNTLQSWNGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPRTLFHEAMKARKDLARILNKILTTRRETQRDYNDLLGSFMSEKEGLTDEQIADNVIGIIFAARDTTASVLTWILKFLGENPSVLQAVTDEQEAIMNEKQSREDNNLTWGDTKNMPITSRVIQETLRVASVLSFTFREAVEDVEYDGYLIPKGWKVLPLFRNIHRSSENFAQPDKFDPSRFEVAQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTNYRWNVVGAEEGIQYGPFALPHNGLPIRISLKK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3182160 3185089 - CmoCh04G006430.1 Cmo04g00643 379618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00643 461 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 402 411 IPR017972 GO:0005506|GO:0016705
Cmo04g00643 461 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 260 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 280 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 328 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 368 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 399 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS E-class P450 group I signature 409 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS P450 superfamily signature 271 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS P450 superfamily signature 329 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS P450 superfamily signature 400 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PRINTS P450 superfamily signature 409 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 PANTHER CYTOCHROME P450 26 14 458 - -
Cmo04g00643 461 PANTHER ABSCISIC ACID 8'-HYDROXYLASE CYP707A2 14 458 - -
Cmo04g00643 461 SUPERFAMILY Cytochrome P450 27 457 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 Pfam Cytochrome P450 33 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00643 461 Gene3D Cytochrome P450 23 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00644 Cmo-Chr1:3292627 Cmo04g00643 Cmo-Chr4:3182160 0 dispersed
Cmo04g00643 Cmo-Chr4:3182160 Cmo11g01361 Cmo-Chr11:9491145 0 dispersed
Cmo12g00402 Cmo-Chr12:2503860 Cmo04g00643 Cmo-Chr4:3182160 8.37E-65 dispersed
Cmo16g00553 Cmo-Chr16:2690840 Cmo04g00643 Cmo-Chr4:3182160 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00643 K09843 - csv:101212508 813.527