Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00651 ATGTCCAGCCCCGGCGATTGGCTTCAATTTTACCATCAAAATCTTTCTACCACGGCGGCGCCACAACCACCTTCCGATTTACCCACCTCCTCTGCAATGATTTTTGCAGAACGAGTTTCTGACGCCACCGCCGTCCCCACTACTTCCGCTGCTATCATCGGAAGTTCGGCTGGAAACCCCGGCTTGAATCCGGAAGGTCGTGTCGGAAAGCCGATTCGTCGCCGGTCCAGGGCGTCACGGCGGACTCCGACGACGTTGCTCAACACGGATACGACGAATTTCAGAGCGATGGTTCAGCAATTCACTGGCGGTCCGACTTCTTCTTTCGCCTCATCGATTTCCCCCAATTTTCCGCTAGGGTTCCGCGGGATTTGTCAATCGAATTTCGGTACTCCACCGAACGCCGTGATTTCTCCACCGTCTGATTATCTACAACCGCCGCAGTTTTATCATTCCAACCCCCAGCCGTTCATGTTTCCGGCCGCTGCACATGGCGGAGACTTTACGCAGAGGATTTCCGTTGCGAGGCCGGCTAATGACGGAGTCGCCGGAGATGGATTTCTGATGGAAAGTGCGGTTTCTTCTCAAATTCCTACCACCGGAGCTTCTGCAGATTCCTCCAACAAGACCAATCACGTAAAGCAGTATCAATACTGTGCTGAGATTTTGGAGGAGGAGGAAGAAGAAGAAGAGGTAGAGATTTCAATGGGGGAAGAAATGGAGCAACTGGTAAACATGGGTTTTCCCGACGAACTGGCGGCGCAAGCTTTAGCTGCTACCGGCGGTAAGTCTACTCTCAAAGCCACTGAATGGATTCTCACACATAAATCCTCTTCTTGTTCTTCACCTTCACCTTCACCTTCCCCCAAACCCAATCTCCCCATTTCTAACCCTAACGTCCAGCCCAAGCTCGACCGTTTCTTCCTCTTCCAGTCCCGCCCTCCGACCCCGCCCACCGCCGCCCTTCCTCAATCGGTTCAGAAACGAGACCCTGCTGCCATCGATTCCGACGTTGCTGACCTTAACCTCCCCCAACTCTCCTCTAAGCGTCCGAAACTCCTGTCCTCCTCGATCGTATCGGTACCGGATTCTTCTGCTGGGAAGGGGAATCAGCCTCCGGACGAGCCTCTGTCGGAGCGGATGCGGCCTCGAAATGTCGATGATGTGGTAGGGCAAGATCATCTACTGGCGAAGAATTCGATACTTCGTTCTGCGCTGGAATGTAATCGATTGCCTTCGATTATCCTTTGGGGTCCGCCTGGTACAGGTAAGACCTCCATTGCCAAAGCTATTGTAGGTTCCACTTCTTCTTTCTCTCAGTCTTTTCGATTTGTGTCCCTGTCTGCTGTGACTTCCGGCGTTAAGGACGTTAGGGATGCTGTTGAGGAAGCTAGAAAAACTAGAATCAAGAACAATAAGAGGACTGTTTTGTTTCTGGATGAGGTTCACAGGTTCAACAAATCCCAACAGGATTCCTTTTTGCCTGTCATTGAAGATGGAAGCATCATCTTCTTGGGTGCCACTACCGAGAATCCTTCTTTCCATTTGATCACCCCTTTGTTGTCTAGATGTAGAGTTCTTACACTTAACGTATTGAAACCCCACCATGTTTCCGTGATTTTAAAACGAGCTATTGATGATTCTGAGAAGGGACTAGCTCGAACTATTTCCATGGGGGTTCAGGTTGGGGATGAAGCCATTGATTTCTTAGCTGCTAATTGTGATGGCGATGCCAGGACTGCTTTGAATGCATTGGAGATCTCTGCTATCACTGCTGCAGCCCGATCCAACCCGGCCCAAATTGACGATTGCAATGTAGAAGATGCCAACGGGAATGCCGTAAGGAATCGAGGCGACACGGCCTCATCATCGTCTGGGGCCGTTGTTACTCTTGATGATGTGAAGGAGGCACTCCAATGTAAGCATCTTGCTTATGATAAAGCAGGGGAGGAGCACTACAATCTAATAAGTGCACTTCATAAGTCCATGAGAGGGAGCGATGCAGATGCTTCAATTTATTGGTTGGCAAGAATGTTGGAAGGTGGAGAACAGCCTCTGTATATAGCTAGAAGACTTGTAAGGTTCGCAAGCGAAGACGTCGGGTTGGCCGATCCATTGGCTCTGAATCAGGCTGTTTCTTGCTATCAGGCCTGCCATTTCATTGGTATGCCCGAGTGCAATGTCATTCTCGCGCAATGTGTGGCTTACTTAGCACTCGCCCCGAAGTCGATTGCGGTGTACCAAGCCATGGGAGCTGCACAGAAGGCTGTGAGGGAATCAGTTGGGCAAAATGAAGGTGTGCCTCTTCATCTTAGGAATGCTCCAACAAAGCTGATGAAGGAAATTGGATATGGGAAAGGCTATATTTACACCCCAGACAATCCCTCTGCAGCTCAGAGCTTTCTTCCACCATCTCTTCAAGGTCACAAATTTCTCAACTGGCCAGAATCACAAGGTACACAAAAATGA 2469 50.06 MSSPGDWLQFYHQNLSTTAAPQPPSDLPTSSAMIFAERVSDATAVPTTSAAIIGSSAGNPGLNPEGRVGKPIRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTSSFASSISPNFPLGFRGICQSNFGTPPNAVISPPSDYLQPPQFYHSNPQPFMFPAAAHGGDFTQRISVARPANDGVAGDGFLMESAVSSQIPTTGASADSSNKTNHVKQYQYCAEILEEEEEEEEVEISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILTHKSSSCSSPSPSPSPKPNLPISNPNVQPKLDRFFLFQSRPPTPPTAALPQSVQKRDPAAIDSDVADLNLPQLSSKRPKLLSSSIVSVPDSSAGKGNQPPDEPLSERMRPRNVDDVVGQDHLLAKNSILRSALECNRLPSIILWGPPGTGKTSIAKAIVGSTSSFSQSFRFVSLSAVTSGVKDVRDAVEEARKTRIKNNKRTVLFLDEVHRFNKSQQDSFLPVIEDGSIIFLGATTENPSFHLITPLLSRCRVLTLNVLKPHHVSVILKRAIDDSEKGLARTISMGVQVGDEAIDFLAANCDGDARTALNALEISAITAAARSNPAQIDDCNVEDANGNAVRNRGDTASSSSGAVVTLDDVKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADASIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYQAMGAAQKAVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSAAQSFLPPSLQGHKFLNWPESQGTQK 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3227619 3231993 - CmoCh04G006510.1 Cmo04g00651 379626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00651 822 Gene3D - 743 822 - -
Cmo04g00651 822 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 252 818 - -
Cmo04g00651 822 Gene3D - 532 606 - -
Cmo04g00651 822 SUPERFAMILY post-AAA+ oligomerization domain-like 649 815 IPR008921 GO:0003677|GO:0006260
Cmo04g00651 822 SUPERFAMILY UBA-like 237 277 IPR009060 GO:0005515
Cmo04g00651 822 Gene3D - 368 530 IPR027417 -
Cmo04g00651 822 MobiDBLite consensus disorder prediction 52 81 - -
Cmo04g00651 822 MobiDBLite consensus disorder prediction 276 298 - -
Cmo04g00651 822 CDD HLD_clamp_RarA 532 609 - -
Cmo04g00651 822 CDD AAA 390 525 - -
Cmo04g00651 822 MobiDBLite consensus disorder prediction 358 384 - -
Cmo04g00651 822 Pfam ATPase family associated with various cellular activities (AAA) 414 526 IPR003959 GO:0005524|GO:0016887
Cmo04g00651 822 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 227 275 IPR015940 -
Cmo04g00651 822 Gene3D - 639 742 - -
Cmo04g00651 822 MobiDBLite consensus disorder prediction 310 330 - -
Cmo04g00651 822 Pfam VQ motif 81 105 IPR008889 -
Cmo04g00651 822 Coils Coil 220 240 - -
Cmo04g00651 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 604 IPR027417 -
Cmo04g00651 822 Pfam MgsA AAA+ ATPase C terminal 665 816 IPR021886 -
Cmo04g00651 822 Gene3D - 234 290 - -
Cmo04g00651 822 SMART AAA_5 410 532 IPR003593 -
Cmo04g00651 822 PRINTS CbxX/CfqX superfamily signature 464 483 IPR000641 GO:0005524
Cmo04g00651 822 PRINTS CbxX/CfqX superfamily signature 413 428 IPR000641 GO:0005524
Cmo04g00651 822 PRINTS CbxX/CfqX superfamily signature 610 622 IPR000641 GO:0005524
Cmo04g00651 822 Pfam AAA C-terminal domain 560 664 IPR032423 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00651 K07478 ycaJ; putative ATPase - csv:101220463 905.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00651 Cmo-Chr4:3227619 Cmo09g00700 Cmo-Chr9:3454180 9.91E-16 dispersed
Cmo04g00651 Cmo-Chr4:3227619 Cmo01g01392 Cmo-Chr1:10972544 3.58E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00651 . . . . . . Cpe01g00548 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013516 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00651 Cmo_Chr04 FPKM 52.314533 57.196892 20.066811 19.531975 43.502502 51.57209 43.79092 23.867567 21.450129 22.481419