Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00653 ATGGTGCTTGGTTGTGCATTGGCTGCAGATTGCACTAAACCAACATTTACCTGGTTGTTGAAGACATGGCTTAGAGCAATGGATGGTCAAGCTCCCAAAGTTATCATTACCGATCAGGACAAAGCCTTGAAATTAGCCATTGAAGAAGTGTTTCCAAATACCCGCCATTGCTTTGCTCTTTGGCATATAATGGAAAAGATTCCTGAAACTCTTGCTCATGTAATCAAACGACACAAAAACTTCTTGTCAAAATTTAGCAAGTGCATCTTGAAGTCGTGGACGGATGAGCAATTTGATATGAGATGGTGGAAGATGGTTACTAGATTTGAGCTTCAAGATGACAAATGGATTCAATCATTATATGATGATCGTAGAAAATGGGTACCAACTTATATGGAGGAAATCTTCTTGGCTGGAATGTCAACTGCTCAACGTTCTGATAGTACGAACGCGTTCTTTGACAAATACATTCACAAGAAAATTACGCTTAAGGAGTTCTTGAAACAATATGGAAACATTCTGCAAAATAGATATGAAGAGGAAACAATAGCAGATTTTGATACATTACACAAACAACCAGCCTTGAAATCTCCTTCTCCCTGGGAAAAACAAATGTCTACAATTTACACGCACACGATATTTAAGAAATTCCAAGTCGAAGTTTTGGGCGTAGTTGGCTGTCATCCAAGAAAAGAAAGTGAAGATGGTGGCATTACTACCTTCAGAGTTCTGGACTGTGAGAAAGATGAGCATTTTTTAGTGAAGTGGCATGAATTGAACTCTGAAGTTTCTTGTTTCTGTCGTTTGTTTGAATATAATGGTTTTCTTTGTAGATATGCATTGATTGTGTTACATATGCATCGTTTTTCAAGCATCCCACCTCAATATCTTCTAAGAAGGTGGACAAAAGATGCAAAGAGCAGGCAAGCAAATACTACTGAAGGAACAGAATTCAGACAGAACAGAGTACAACGTTACAATAATCTATGTAAAAAAGCTATTGAGTTAAGTGAAGAAGGATCACAATCAGAGGAGTGTTATAATATTGTCATTCGTGCATTAGTAGAAGCTCTGAAGAATTGTGTCAATATTAACAACTCAAAAAGTGCTCCAGCAGAATCGAGCGTTAATGGCTATGGTGTACGTGAGGAAGAGGAGAACCAAGAAAGCATAGCTGCTAAAGCAAATAAGAGGAGTACGAACAGAAAACGAAAGGTACAAACAGAAACAGCTATGATACTTGATGAATCCCAGAACAACTTGCAGCAAATGGATGGTTTAACCTCAGATAGCATGACCCTGAGTGGATATTATGGATCCCAACAGAATGTTCAAGGATTGGTACAGTTGAACTTGATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTTTTTTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGACCAGCAACAAGTCATAGTTATAGTTTACAGGATGAGCAACATTTAAGATCTGCCCAGCTTCATGGCAGTACCTCAGGACATACTTGA 1584 39.14 MVLGCALAADCTKPTFTWLLKTWLRAMDGQAPKVIITDQDKALKLAIEEVFPNTRHCFALWHIMEKIPETLAHVIKRHKNFLSKFSKCILKSWTDEQFDMRWWKMVTRFELQDDKWIQSLYDDRRKWVPTYMEEIFLAGMSTAQRSDSTNAFFDKYIHKKITLKEFLKQYGNILQNRYEEETIADFDTLHKQPALKSPSPWEKQMSTIYTHTIFKKFQVEVLGVVGCHPRKESEDGGITTFRVLDCEKDEHFLVKWHELNSEVSCFCRLFEYNGFLCRYALIVLHMHRFSSIPPQYLLRRWTKDAKSRQANTTEGTEFRQNRVQRYNNLCKKAIELSEEGSQSEECYNIVIRALVEALKNCVNINNSKSAPAESSVNGYGVREEEENQESIAAKANKRSTNRKRKVQTETAMILDESQNNLQQMDGLTSDSMTLSGYYGSQQNVQGLVQLNLMEPPHDASYYVNQQSIQGLGQLNTIAASQDGFFGAQHNGIHALVDYRPATSHSYSLQDEQHLRSAQLHGSTSGHT 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3242262 3244657 - CmoCh04G006530.1 Cmo04g00653 379628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00653 527 SMART 26again6 263 290 IPR006564 GO:0008270
Cmo04g00653 527 Pfam MULE transposase domain 3 65 IPR018289 -
Cmo04g00653 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 441 IPR031052 GO:0006355
Cmo04g00653 527 MobiDBLite consensus disorder prediction 372 405 - -
Cmo04g00653 527 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 1 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00653 - - - csv:101210541 926.776
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00653 Cmo16g00537 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00653 Cmo-Chr4:3242262 Cmo13g00877 Cmo-Chr13:7958155 2.08E-144 dispersed
Cmo04g00653 Cmo-Chr4:3242262 Cmo04g00656 Cmo-Chr4:3247498 0 proximal
Cmo16g00537 Cmo-Chr16:2608907 Cmo04g00653 Cmo-Chr4:3242262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00653 Cmo16g00537 . . . . Cpe14g00417 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00653 Cmo_Chr04 FPKM 5.913975 7.036993 24.106802 23.864531 26.262962 23.179644 24.504654 15.855894 15.848661 17.289024