Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00656 ATGGATATAGATCTTAGGTTGCCTTCTGGTGAGCATGACAAAGATGAAGAATCAAATGCAATTAACAATATGTTGGATGTGAAAGAAAAACTTCATAATGGAGTTATTGGGAGTGGAAGTATGGTTGATACTACAGAGGGGATGCACATTGAAGATGGTGGAGATTCAAAACCCCCTCTGCTAGACATGGTAATGTTTAAAGAGGACACAAATTTGGAACCACTTCCTGGTATGGAATTTGAATCACACAGTGAAGCATATTCCTTTTATCAGGAATATGCTCGCTCTATGGGATTCAACACAGCAATACAAAATAGCCGCCGTTCAAAGACATCAAGGGAATTTATTGATGCAAAATTTGCTTGTTCCCGTTATGGTATGAAGAGAGAGTATGATAAGTCCTTCAATCGTCCACGTATAAGGCAAACTAAACAAGAAAGTGAAAATTCAACTGGTCGAAGAGCATGTGCGAAGACAGACTGCAAAGCTAGCATGCATGTGAAGAGGAGGGCGGATGGTAAATGGGTTATTCATAGTTTTTTTAAGTTGCATAACCACGAGCTTTTACCAGCTCAAGCTGTCAGTGAACAAACAAGAAAGATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACAAAAATGTGGTAGGGCTGAAGAATGACTCCAAGAATCCCTTTGATAAGGTCTGCAGTTTGGCTTTTGAAGCTGGCGATGCAAGGGTTTTACTTGACTTCTTTACTCAGATGCAGAATTTGAACTCTAACTTCTTTTATGCTGTAGATATTGGCGAAGATCACCGGCTAAGGAATTTATTTTGGATCGATGCAAAAAGTAGGCATGACTATATTTATTTTAATGATGTGGTTTCTCTTGATACTACCTACATTAGAAATAAATATAAGATGCCCCTTGCTTTCTTTGTTGGGGTGAATCAACATTATCAATTTATGTTGCTAGGATGTGCTTTGCTATCAGATACAAGTCCAGCAACATATGCATGGTTATTACGTACATGGTTGAAAGCAATTGGTGGACAGGCTCCAAAAGTCGTTATCACTGATCATGATAAGGTACTGAAGTCACTTATTCCAGAGGTGCTTCCAAATGTGTATCATCACTTCACTTTGTGGCATATATTAGGAAAACTTTCTGAAAACCTTGGTAATGTAATGAAACAACATGATAATTTTATGGCAAAATTTGAAAAATGCATCTATAGGTCATGGACAAAGGAAGAGTTTGAGAAAAGGTGGTGGAAACTGGTTAACAGATTTGAACTCAAGGAAAATGAGTTGGTTCAGTCCTTATGTGAAGATCTAAGACACTGGGCGCCTACATACATGACAGATGTCTTTTTGGCTGGAATGTCCACAGCACAACGATCTGAAAGTGTAAACTCTTTCCTAGATAAGTATTTGCACAAGAAGACCACTGTACAAGAGTTTGTGAAACAGTATGAAGCAGTTTTACAGGATAGGTATGAAGAGGAAGCAAAAGCTGATTTTGATACTTGGAACAAACAACCCACCTTAAAATCTCCTTCACCATTTGAGAAGAATGTTTCGGGGCTGTACACACATGCAGTATTTAAAAAATTTCAAGTTGAGGTCTTAGGTGCTGTTGCTTGCCATCCTAGGAGGGAAAAGCAAGATGATGAAAACATTACCTATCATGTTCAAGATCTTGATAAGAAACTTGACTTCATTGTTGTATGGAATGAACTGAAGTCGGAAGTTTCTTGTCTATGCCGGTTATATGAATCTAAAGGTTACCTTTGTAGACATGCTATGATTGTTCTTCAAATTTGTGAACTTTCTACTATTCCACCTCAATATATTTTAAAACGGTGGACAAAAGATGCTAAGAGCCACCAATTAATGGGAGAAGAACCTGAGCCAGGACAATCTCGGGTTCATCGGTACAATGATCTATGCCAACGAGCATTGAGATTGATTGAAGAGGGATCTTTGTACCGAGAGAGTTACAGTATTGCAGTGCATGCACTCGATGAAACGCTTGGACATTGTATTGGTATCAATAGTTCTAATAGAACTGTTTTAGAAGCTGGTACATCAGCAGCTCATGGTCTACTCTGCATTGAAGACGACAATCAGATTAGAAACATAGGCAAGACAAACAAGAAAAAAAATCCAACTAAGAAACGGAAGGTGAATTTCGAGTCTGATGTCATGACTGTTGGAGCACAAGATAGCTTGCAGCAGATGGACAAATTAAGCTCAAGAGCAGTAACCCTTGATGGCTATTTTGGCACACAGCCAAGTGTGCAAGGAATGGTACAACTTAACTTAATGGCACCAACCCGTGATAATTATTATGGAAATCAACAGGCCATCGGAGGGCTGGGGCAATTAGACTCAATAGCACCTAGCCATGATGGTTATTATGCTGATCAACAGAGTATCCATGCACTGGGACAAATGGATTTTTTCCGAACACCGACTGGTTTCACCTATGGCATTCGGGATGATCCCAATGTACGAACAACTCAGTTGCATGATGATGCATCAAGACAAACATGA 2541 39.32 MDIDLRLPSGEHDKDEESNAINNMLDVKEKLHNGVIGSGSMVDTTEGMHIEDGGDSKPPLLDMVMFKEDTNLEPLPGMEFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRIRQTKQESENSTGRRACAKTDCKASMHVKRRADGKWVIHSFFKLHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVCSLAFEAGDARVLLDFFTQMQNLNSNFFYAVDIGEDHRLRNLFWIDAKSRHDYIYFNDVVSLDTTYIRNKYKMPLAFFVGVNQHYQFMLLGCALLSDTSPATYAWLLRTWLKAIGGQAPKVVITDHDKVLKSLIPEVLPNVYHHFTLWHILGKLSENLGNVMKQHDNFMAKFEKCIYRSWTKEEFEKRWWKLVNRFELKENELVQSLCEDLRHWAPTYMTDVFLAGMSTAQRSESVNSFLDKYLHKKTTVQEFVKQYEAVLQDRYEEEAKADFDTWNKQPTLKSPSPFEKNVSGLYTHAVFKKFQVEVLGAVACHPRREKQDDENITYHVQDLDKKLDFIVVWNELKSEVSCLCRLYESKGYLCRHAMIVLQICELSTIPPQYILKRWTKDAKSHQLMGEEPEPGQSRVHRYNDLCQRALRLIEEGSLYRESYSIAVHALDETLGHCIGINSSNRTVLEAGTSAAHGLLCIEDDNQIRNIGKTNKKKNPTKKRKVNFESDVMTVGAQDSLQQMDKLSSRAVTLDGYFGTQPSVQGMVQLNLMAPTRDNYYGNQQAIGGLGQLDSIAPSHDGYYADQQSIHALGQMDFFRTPTGFTYGIRDDPNVRTTQLHDDASRQT 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3247498 3251941 - CmoCh04G006560.1 Cmo04g00656 379631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00656 846 Pfam MULE transposase domain 288 380 IPR018289 -
Cmo04g00656 846 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 58 784 - -
Cmo04g00656 846 SMART 26again6 579 606 IPR006564 GO:0008270
Cmo04g00656 846 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Cmo04g00656 846 Pfam FAR1 DNA-binding domain 88 190 IPR004330 -
Cmo04g00656 846 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 784 IPR031052 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00656 - - - bhj:120074852 1547.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01391 Cmo-Chr1:10965207 Cmo04g00656 Cmo-Chr4:3247498 0 dispersed
Cmo04g00656 Cmo-Chr4:3247498 Cmo16g00537 Cmo-Chr16:2608907 0 dispersed
Cmo04g00653 Cmo-Chr4:3242262 Cmo04g00656 Cmo-Chr4:3247498 0 proximal
Cmo04g00654 Cmo-Chr4:3244730 Cmo04g00656 Cmo-Chr4:3247498 2.57E-80 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00656 . . . . . Cpe14g00416 Cpe01g00551 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9547 PF03101 FAR1 5.50E-26 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00656 Cmo_Chr04 FPKM 4.882353 3.900629 8.002288 6.265544 13.326365 11.552965 11.209885 10.912518 10.649749 12.612237