Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00659 ATGGCCTTCAATCATCTCCTTCGTTCTACTCTTAGGTCTCAGTTTGGTAGCTTTACAAAAGCCGTCACTGCTTCTAGTAGAGCTTCACAGGAACATGGCATCCTAGCCATCCTAGCTCCCTGTCTGTCCCGCTTCTACGGTACAGGGGCTTCAGTTCAAAAAGATGATCCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTGCAGGATGGCAGACCACTGATGTTCATCCACTAATCATAGAGAAATCCGAGGGCTCATATGTATATGACATTGATGGAAAGAAGTACCTTGACTCTCTTGCCGGTCTATGGTGCACATCTTTAGGGGGAAACGAACCACGACTTGTGGCAGCTGCTACTTCACAATTGAATACCTTGCCATTTTACCACTCCTTTTGGAATCGTACAACGAGGCCTTCTTTGGATCTGGCCAAGGAACTCCTTGAAATGTTTACTGCAAGGAAAATGGGGAAAGTATTTTTTGTTAACAGTGGTTCAGAGGCCAATGATACTCAGGTCAAGCTGGTATGGTACTATAACAATGCACTTGGAAGACCGAATAAGAAGAAGTTCATTGCTCGCTCAAAAGCGTACCATGGCTCAACATTAATATCAGCCAGTCTTACTGGCCTTCCGGCTTTGCACCAAAAGTTTGACATTCCAGCTCCATTTGTTCTGCACACTGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAGACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTAGAAGACCTTATACTCAAGGAGGGACCAGAAACGATTGCTGCGTTCATCGCTGAACCTGTCATGGGAGCTGGTGGTGTGATTCCTCCACCTGCTACTTATTTTGAAAAGATCCAAGCTGTGGTCAAGAAGTATGATATACTTTTTATTGCTGATGAGGTAATCTGTGCCTTTGGAAGACTAGGGACAATGTTTGGATGCGATAAATACAATATTAAACCAGACCTTGTATCTCTTGCAAAGGCGCTTTCCTCGGGATACATGCCAATTGGAGCTGTTATTGTGAGCCCTGAAATCTCTGATGTGGTTCACTCTCAAAGCAACAAGCTTGGTTCCTTTGCTCATGGATTTACATATTCTGGACACCCGGTTTCATGTGCTGTTGCAATTGAAACACTCAAGATCTACAAGGAAAGGAATATTGTGGATAAAGTAAATAGCATTTCCTCAAGGTTTCAAGATGGCCTTAAAGCTTTCTCTGACAGCCCTATCGTTGGAGAGATACGAGGGACTGGCTTGATCTTGGGCACAGAGTTTGTAGACAATAAATCACCAAATGATCCCTTCCCTCCTGAATGGGGAGTCGGTGCATACTTTGGAGCCGAATGTCAGAAAAATGGTATGCTTGTACGTGTTGCAGGGGATACTATAATGATGTCTCCACCATTTATCATCTCTCCTCAAGAAGTTGATGAGTTAATCAGCATCTATGGGAATGCTCTAAAGGCTACTGAAGAGAGAGTGAAGGAGCTGAAGGCTCAGAGGTAG 1533 44.23 MAFNHLLRSTLRSQFGSFTKAVTASSRASQEHGILAILAPCLSRFYGTGASVQKDDPGFKGHDMLAPFTAGWQTTDVHPLIIEKSEGSYVYDIDGKKYLDSLAGLWCTSLGGNEPRLVAAATSQLNTLPFYHSFWNRTTRPSLDLAKELLEMFTARKMGKVFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKAYHGSTLISASLTGLPALHQKFDIPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSGYMPIGAVIVSPEISDVVHSQSNKLGSFAHGFTYSGHPVSCAVAIETLKIYKERNIVDKVNSISSRFQDGLKAFSDSPIVGEIRGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAECQKNGMLVRVAGDTIMMSPPFIISPQEVDELISIYGNALKATEERVKELKAQR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3262872 3268538 + CmoCh04G006590.1 Cmo04g00659 379634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00659 510 Coils Coil 489 510 - -
Cmo04g00659 510 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 304 341 IPR005814 GO:0008483|GO:0030170
Cmo04g00659 510 CDD OAT_like 74 496 IPR005814 GO:0008483|GO:0030170
Cmo04g00659 510 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 11 506 - -
Cmo04g00659 510 Gene3D Aspartate Aminotransferase, domain 1 80 496 IPR015422 GO:0003824
Cmo04g00659 510 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 11 506 - -
Cmo04g00659 510 SUPERFAMILY PLP-dependent transferases 65 497 IPR015424 -
Cmo04g00659 510 Gene3D - 114 396 IPR015421 GO:0003824
Cmo04g00659 510 Pfam Aminotransferase class-III 78 493 IPR005814 GO:0008483|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00659 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - csv:101211530 957.592
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00659 Cmo16g00534 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00659 Cmo-Chr4:3262872 Cmo16g00532 Cmo-Chr16:2585050 0 dispersed
Cmo18g00454 Cmo-Chr18:3013578 Cmo04g00659 Cmo-Chr4:3262872 3.48E-40 dispersed
Cmo04g00659 Cmo-Chr4:3262872 Cmo01g01390 Cmo-Chr1:10955408 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00659 Cmo16g00534 . . . . . Cpe01g00553 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00659 Cmo_Chr04 FPKM 2.56048 2.571605 12.910267 13.219324 10.099998 7.749247 9.226255 5.80233 5.478047 5.668193