Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00661 ATGCTTCGCAGTTTAATCCCTCATTCCCCCATCAATTCCGCTTCCAATTCCATGTCGTCCAAGCGCCCCGCCGACGCCGACTCCGCCGCCGACGACCCTTCCTCTAAGCGTCTCAATTCCGGTCCCTCCAACTTCCACGCCGGCGCCTCCGGGGAGAAGGACGTCGAGGAGGAAGAAGAGCTTCCGCTTGTCGATGGCAGCGACTCCACTGGTTTGAGGCTGCTAGGTCTTCTTCTTCAATGTGCTGAGTGCGTCGCTATGGATAATCTACAAGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTCTCCTCGCCGTTCGGTACCTCACCTGAGCGCGTCGGCGCGTACTTTGCCCACGCGCTTCAGGCTAGAGTGATAAGTTCTTGCTTGGGAACCTACTCGCCCTTGTCGATTAGGACGCTGAATCAAACTCAGTCGCAGAGGATGTTTAATGCTCTGCAATCCTACAATTCGATCAGTCCCTTAATCAAGTTCTCTCACTTCACTGCTAATCAAGCCATTTTCCAAGCCTTGGACGGCGAGGATCGAGTCCACGTTATCGATCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCTCGAAGAAAATCCAATCCCTACGAATATCCGGCTTCGGATCCTCTTCGGAATTGCTCCAATCCACCGGGCAGAGACTCGCCGATTTCGCAACCTCCCTCGGCCTCCCGTTCGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCAAAGCAACTGGAATTGAGGGCAGGCGAGGCGGTGGTAGTGCACTGGATGCACCATTGCTTGTACGACATAACCGGCAGCGATATAGGTACGCTGAGACTTCTTTCAACCCTAAAACCTAAACTGATCACCATTGTGGAACAGGATCTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTAGAAGCTCTGCATTACTACAGCGCGTTATTCGACGCGCTGGGTGATAGTTTGGCGATGGATAGCGTGGAAAGGCATGTGGTGGAGCAGCAATTGTTGGGATGTGAGATTAGGAACATTATCGCCGTCGGTGGACCCAAAAGAACTGGAGAAGTGAAGGTGGAGAGATGGGGGGATGAACTGAAACGGGTCGGGTTCGGAGCCGTCTCTCTTGGGGGAAACCCAGCTGCTCAGGCCAGTCTGCTTCTGGGCATGTTCCCCTGGAAAGGGTATACTCTGGTTGAAGAAAATGGGTGCCTGAAACTCGGATGGAAGGACCTTTCCCTGCTCACAGCCTCTGCCTGGCAGCCCTGTGATTGA 1317 53.99 MLRSLIPHSPINSASNSMSSKRPADADSAADDPSSKRLNSGPSNFHAGASGEKDVEEEEELPLVDGSDSTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLSIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRSKKIQSLRISGFGSSSELLQSTGQRLADFATSLGLPFEFHPVEGKIGNLTDPKQLELRAGEAVVVHWMHHCLYDITGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFGAVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPCD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3290743 3292059 - CmoCh04G006610.1 Cmo04g00661 379636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00661 438 MobiDBLite consensus disorder prediction 8 23 - -
Cmo04g00661 438 Pfam GRAS domain family 76 435 IPR005202 -
Cmo04g00661 438 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Cmo04g00661 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 435 IPR005202 -
Cmo04g00661 438 PANTHER SCARECROW-LIKE PROTEIN 23 43 435 - -
Cmo04g00661 438 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00275 Cmo-Chr3:4017235 Cmo04g00661 Cmo-Chr4:3290743 1.68E-160 dispersed
Cmo04g00661 Cmo-Chr4:3290743 Cmo08g00257 Cmo-Chr8:1595233 6.10E-111 dispersed
Cmo04g00661 Cmo-Chr4:3290743 Cmo07g01227 Cmo-Chr7:6689035 9.21E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9548 PF03514 GRAS 6.90E-116 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00661 - - bhj:120092974 744.191