Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00665 ATGCAGGCTGCGAGTGGTGCTGCAGTGATGGGCTCTCTGCAAGTTGTTGTTTGTGCGAAGGGATCGTCTTTTCCTTCGAAAGGGTCTAGCATTTGTGTGTTTCCGCAACACAAGAAATGGACCGTCTTAAAGCCCTGCAAATCCTCCAGTGTTGAAGCAAACATGGTTGCGGGGAAGGCATCATCTTCTGTATCTGTCTCTGCTCCACAACTTGGAGGTGGAAGCGGTTTTGTAGACCATGGCTTGAGTGAAGCAGATCCCGATGTTCGAAGCATTATCGATAAAGAAAAGCAGCGACAGTTTAAAAGCCTTGAACTCATTGCATCTGAGAATTTTACATCTAGGGCAGTTATGGAGGCAGTAGGGTCCTGCCTCACAAACAAGTACTCGGAAGGATTGCCTGGAAAAAGGTACTATGGTGGCAATGAACATATTGATGAGCTTGAAACACTCTGTCAACAAAGGGCTCTAGCAGCATTTCGTTTGGACAATAACAAGTGGGGTGTAAATGTTCAACCGTTATCTGGATCACCTGCTAACTTTGAGGTTTATACAGCAATTCTTAATCCACACGATCGAATCATGGGTTTGGACTTGCCTCATGGAGGACATTTGTCTCATGGGTTTATGACACCAAAGAGGCGGGTGTCAGGCACATCAATTTATTTTGAATCTATGCCTTATCGTCTTGACGAGACTACAGGCATTGTAGATTATGACATGCTCGAAAAAACTGCCAACTTATTTCGACCAAAGCTGATTATTGCTGGTGCAAGTGCTTATCCACGTGATTTTGATTATCCTCGCATGAGAAAAATTGCTGATGCTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCTGCTTCGGTGGTTGCTGATCCTTTTGAATACTGTGATATTGTGACCACAACAACACACAAGTCTCTGAGAGGTCCAAGAGGTGGCATGATTTTCTTCAGAAAAGATCCTGTCCTGGGAGTTGACTTAGAATCTGCAATTAATAATGCTGTGTTCCCAGGATTACAGGGTGGTCCTCATAATCATACAATTGGGGGACTTGCTGTCTGCTTGAAGCATGCTCAATCTCCAGAATTTAAGGACTATCAGAACAAGGTCGTCTCCAATTGCAGAGCTCTTGCTAGTCGATTGGTCGAGTTAGGTTATAAGCTAGTTTCTGGTGGAAGTGACAATCACCTGGTTCTTGTAGATCTAAGGCCATTGGGCATCGATGGGGCACGGGTGGAAAAGATTCTCGACATGGCCTCAATCACTCTCAACAAGAACTCAGTACCAGGTGACAAGAGTGCTCTAGTTCCAGGAGGCATCCGAATCGGATCGCCTGCCATGACCACCCGAGGATTCACTGAGAAGGAATTCATTGCAGTTGCAGACTTCATACATGAGGGCGTTAAGATAACTCTCGATGCCAAACCACTAGCCCCAGGATCAAAGCTTCAAGAGTTCCTCAAGTTTGTAGCAACCTCTGATTTCCCCTTAATCGACCGAGTTTCGAATCTTCGCTCGAGAGTTGAAGCTCTTACAACTCAATTCCCAATTCCTGGCTTAATAGAACCCACCGCGTTTGTGTGGGTGCTGTGTCTTTTTCTTGTTGTTTTAGAATTGGTTTCTACGCGGAGGAGGAGGAGGACGACGACGACCACACCGTTGTTTTTTGTTGTTTGGTTGTTGTTTCTCGGCTTCTTTGTCTGCTTCTGTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTGTTTTGGTGTTTTTTGGTTGTATGGTTCGTCCCTTTCCGCGATTCTTCGAGGTTGTTTGATTCTTTCTTATGCCATGGAACAACTTGTTGATGCCAAGGATTTGAAGGGCTCTACGGAGAATTCCTCTGGTATTTTGGCTAACGTGACTAGAGGTTACTCAGCTCAGCTGGTATATTTTGGCTCCTTCTGTTTGTATTTTCCCATTCTTGTTGAAAGTCTCAATTTCCTATCTAATTCACTCTTTGATGCTTCACGATATGAATTTTTTGGTCAAAATGTCGTGGGAGAAGTGGAGCTGGGAGGTTTAGAAGAAGACGAAGATGTTCCATTATTTGGGTCTACAGATGAAGAATATCGTTTGTTTGTTCAGGAAGAGGGTACAGGGTTGGGATCTTTATCGGAAATGGATGATTTGGCAAACACTTTTGCAAAGCTGAACAAAGTTGTTACTGGACCAAGACACCCTGGAGTTATTGGAGACCGAGGATCTGGTTCTTTTTCTCGGGAAAGTTCGTCTGCAACTGATTGGGCACAAGATGGAGAGTTTTGTAATTGGATAGAGCAGCATGTATTTGATTCAGAATGTGCTCAGGAGGAGAAGAGATGGTCATCTCAACCTCAATCTTCTATTCGTCTTCCTGAACCAAAACCTTTGTATAGAACGTCCTCTTATCCTCAGCAGCAGCCTACACAACATCACTTTTCTAGTGAACCAATTTTAGTACCAAAATCTTCTTTCACATCATTCCCTCCTCCAGGAAGTAGGTCTCAACATGGTTCACCTCGTCACCTAAATGTTTCATCCCTTCCTGATGGAAGTCAGTTACCCTTCTCTGCACCTAACATCGCCTCTTTATCCAAGTCTAATATGCAGTTAGCTGGGATGCCGCATGGCTTGCATTATGGAGGCAACATGCACCAGTTCACCACTCCCGGCCTTTCTTTTAGTAGCAGGCCACAAAATCAGTGGATTAACAACGCTGGTCTATTACATGGGGATCACTCAAATCTCTTGAACAGTATATTGCAACAGCAACTATCTCATCAAAATGGCATCCTATCCTCTCAGTTATTGTCAGCTCATCAGCAGCTGCAACAGCACAGGCTACATCATCCAGTACAACCATCTTTGGCGCATTTTGCAGCTCTTCAGTCTCAGCTCTATAATGCCCATTCACCATCTTCCCATAGAGCAATCCTTGGATTGACTGATGTGAGAGATCAGAAACCTAAATCACAGAGAGGGAAACATAACATGCGTTCTTCTCAGCAAGGTTCTGAAACTGGTAGTCAAAAGAGTGATAGTGGATCCTTCCAGTTCAGATCTAAGCATATGACAGCTGATGAGATAGAAAGTATTCTGAAGATGCAGCATGCTGCCACCCACAGCAATGATCCTTACATAGATGACTATTATCACCAGGCTCGTGTTGCCAAAAAAGCTGCTGGGTCAAGATCAAAGAATGCATTTTGTCCCTCCCGACTAAGAGAGCTTCCATCTCGATCTCGTAGTGGTTCAGATCAGCATTCTCATTCCACACCTGATTCATTGGGAAAAATACCTTTAGCTTCCATTCGTAGACCTCGCCCTCTTCTTGAAGTTGGTCCTCCATCCTCAGGTTTGTGTGACGGTAGCTCTGAACAGACGATATCCGAAAGGCCTCTTGAGCAAGAACCAATGCTTGCTGCTAGAATCACCATTGAAGATGGTCTCTGTCTTCTTCTTGATATAGACGATATTGATCGGCTATTACAACATAATAAACCACAAGATGGAGGAGTCCAGCTCAGACGAAGGCGACAGATGCTGCTGGAAGGTATGGCAGCGTCACTTCAGCTTGTTGACCCCCTTGGAAAAAGTAGCCATGGTGTTGGCCCGTCTCCAAAGGATGACATTGTGTTCTTGCGTTTGGCCTCTCTTCCCAAAGGTCGAAAGCTTCTTTCTAAATTCCTCAAGCTGATTTTCCCTGGTAGCGAGCTTGCACGAATTGTCTGTATGGCTATTTTTCGTCACTTGAGGTTCTTGTTTGGGGGACTTCCATCTGATCCTGGAGCAGCTGAGACAACCTCTAATCTCTCAAAGACTGTTTCTGCCTGTGTTAACGGTATGGACCTTCGTGCATTAAGTGCTTGTCTTGTTGCTGTTGTCTGCTCATCAGAGCAGCCACCACTACGCCCCCTTGGAAGTTCTGCTGGAGATGGAGCCTCTATTGTTCTGAGGTCCATTCTTGAAAGGGCTACAGAATTATTAACTGATCCTCATGTTGCTAGTAACTGTAGCATGCCTAATCGAGCGCTATGGCAGGCATCTTTTGATGAATTCTTCAATCTCCTTACCAAGTACTGTGTGAGTAAATACGAGACTATAGTGCAGTCATTATTTTCGCAGACACCATCGACCACTGATGTTATAGGGTCAGAGGCAGCCAGAGCCATCAGTCGCGAAATGCCTGTGGAGCTTCTTAGGGCCAGCCTTCCCCACACCAATGAACCACAAAGGAAGCTTTTAATGGATTTTGCCCAGCGTTCCATGCCAGTTTCAGAATTCAGTGCCCATGGTGGAAGTCGTGGACAAATGAATTCAGAATCAGTTAGGGGTTAG 4380 45.0 MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKASSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDNNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYDMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKDYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITLDAKPLAPGSKLQEFLKFVATSDFPLIDRVSNLRSRVEALTTQFPIPGLIEPTAFVWVLCLFLVVLELVSTRRRRRTTTTTPLFFVVWLLFLGFFVCFCSSSSSSAAAAAAAACFGVFWLYGSSLSAILRGCLILSYAMEQLVDAKDLKGSTENSSGILANVTRGYSAQLVYFGSFCLYFPILVESLNFLSNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVQEEGTGLGSLSEMDDLANTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWAQDGEFCNWIEQHVFDSECAQEEKRWSSQPQSSIRLPEPKPLYRTSSYPQQQPTQHHFSSEPILVPKSSFTSFPPPGSRSQHGSPRHLNVSSLPDGSQLPFSAPNIASLSKSNMQLAGMPHGLHYGGNMHQFTTPGLSFSSRPQNQWINNAGLLHGDHSNLLNSILQQQLSHQNGILSSQLLSAHQQLQQHRLHHPVQPSLAHFAALQSQLYNAHSPSSHRAILGLTDVRDQKPKSQRGKHNMRSSQQGSETGSQKSDSGSFQFRSKHMTADEIESILKMQHAATHSNDPYIDDYYHQARVAKKAAGSRSKNAFCPSRLRELPSRSRSGSDQHSHSTPDSLGKIPLASIRRPRPLLEVGPPSSGLCDGSSEQTISERPLEQEPMLAARITIEDGLCLLLDIDDIDRLLQHNKPQDGGVQLRRRRQMLLEGMAASLQLVDPLGKSSHGVGPSPKDDIVFLRLASLPKGRKLLSKFLKLIFPGSELARIVCMAIFRHLRFLFGGLPSDPGAAETTSNLSKTVSACVNGMDLRALSACLVAVVCSSEQPPLRPLGSSAGDGASIVLRSILERATELLTDPHVASNCSMPNRALWQASFDEFFNLLTKYCVSKYETIVQSLFSQTPSTTDVIGSEAARAISREMPVELLRASLPHTNEPQRKLLMDFAQRSMPVSEFSAHGGSRGQMNSESVRG 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3298998 3313469 + CmoCh04G006650.1 Cmo04g00665 379640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 1440 1459 - -
Cmo04g00665 1459 PANTHER LOW QUALITY PROTEIN: PROTEIN PAT1 HOMOLOG 1-LIKE 668 1457 - -
Cmo04g00665 1459 Hamap Serine hydroxymethyltransferase [glyA]. 81 527 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cmo04g00665 1459 Gene3D - 111 376 IPR015421 GO:0003824
Cmo04g00665 1459 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 668 1457 IPR039900 GO:0000290
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 997 1032 - -
Cmo04g00665 1459 CDD SHMT 84 499 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 1075 1145 - -
Cmo04g00665 1459 SUPERFAMILY PLP-dependent transferases 80 528 IPR015424 -
Cmo04g00665 1459 Pfam Serine hydroxymethyltransferase 82 472 IPR039429 -
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 1010 1032 - -
Cmo04g00665 1459 Gene3D Aspartate Aminotransferase, domain 1 86 526 IPR015422 GO:0003824
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 813 873 - -
Cmo04g00665 1459 MobiDBLite consensus disorder prediction 790 873 - -
Cmo04g00665 1459 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 305 321 IPR019798 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00665 K12617 PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1 - csv:101213130 1425.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01358 Cmo04g00665 CCT
Cmo04g00665 Cmo09g00732 CCT
Cmo04g00665 Cmo16g00524 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01358 Cmo-Chr1:10710482 Cmo04g00665 Cmo-Chr4:3298998 0 dispersed
Cmo04g00665 Cmo-Chr4:3298998 Cmo09g00732 Cmo-Chr9:3662546 0 dispersed
Cmo16g00525 Cmo-Chr16:2541260 Cmo04g00665 Cmo-Chr4:3298998 0 transposed
Cmo16g00524 Cmo-Chr16:2531128 Cmo04g00665 Cmo-Chr4:3298998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1017 . . . . . . . Bma12g00370 . . . . . . . . . . . . . . . . Cla10g00891 . Cec10g0954 . . . . Cone12ag0978 . . . . . . . . . Bda15g00495 . . . . . . Cmo04g00665 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g989 . . . . . . . . Cmo16g00524 Cmo04g00665 Cma01g01303 Cma09g00740 Car01g01110 Car09g00650 . . Cpe02g00629 . . . . . . . Cla11g01597 Cam11g1663 Cec11g1692 Cco11g1688 Clacu11g1821 Cmu11g1633 Cre11g2049 . . . . Lsi04g01874 . . Cme07g00754 . . . . . . . . . Cmo01g01358 Cmo09g00732 Cma04g00618 Cma16g00483 Car04g00578 Car16g00439 Cpe14g00410 Cpe01g00557 . . . . . . . Cla07g01031 Cam07g1474 Cec07g1183 Cco07g1160 Clacu07g1085 Cmu07g1073 Cre07g1449 . . Chy07g01071 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001208 3 3 3 3 4 1 4 1 1 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00665 Cmo_Chr04 FPKM 6.809876 6.407017 4.664127 4.420874 3.803597 6.573895 7.40802 1.230115 2.328225 0.838404