Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00667 ATGGCGCCAACTAACGGCTACTCTGATTTCTCCCTCTTGCAAAAGGTAGGGGCGGAGTTCATTGGAACATACATAATGCTATTCTCCGCAGCGGCGGCGCCCATTCTGAACGAGAAGTACCAGGCGGCGGAGAACGGCCTGATGACGAGTGCGATATGCGCAGGACTCGCGGTGATGGCCGTAATCCTCTCCATCGGTCACATCTCCGGCGCTCACTTGAATCCCTCCGTCACTGTAGCCTTCGCCGCTCTCCGTCACTTTCCATGGCTTCACGTCCCGCTCTACATCACCGCTCAGATATCCGGATCTATTTCCGCCGCTTTCAGCCTCAAGATCGTCTTCCGTCCGTTCATGTCCGGCGGCGCCACCGTGCCCTCCGTCGGCACCGGTCAGGCCCTCGCGATCGAGTTCATCGTCACATTCTTCCTCATGTTCGTCATTGTTGCTGTCGCCACTGATACCAGAGCGGTCGGGGAATTGGCCGGAATTGCAATCGGAGGCATGGTAATGCTCAACATTCTCGTCGCCGGGCGCGCAACCGGCGGTTCGATGAACCCGGCGAGGACCTTAGGCCCAGCCATCGCAACAGAAAATTTCAAAGGTCTATGGATATACATAGTAGCACCCACAGCCGGAGCAGTGGCTGGTGCAGCCGGCTACACAGCCGTGAAGCTCCGTCAAGACACGGCAGCGGAATCAGCGCGGCGAAATGAAGGAAGCCTCAGCCGATTGGGAGAAAGCTCGCAAGCGGTGGTCCCGTCGAGATCCAGTGGAAACTCGGCATGGAAGCTGGACGGCGGTTCGTGGCTGTGTTTAGCCGGAGAGTGCAGGAAGGAGTGCTCGGAATTGGAGCATCTGAATGTGATTCTGTGTTACAAGGAAGCTAATCAGATCGCAGAATTTCTGGGCAAGAACGAAGCAGGCGACGAGGGTTTGGTATAA 942 56.9 MAPTNGYSDFSLLQKVGAEFIGTYIMLFSAAAAPILNEKYQAAENGLMTSAICAGLAVMAVILSIGHISGAHLNPSVTVAFAALRHFPWLHVPLYITAQISGSISAAFSLKIVFRPFMSGGATVPSVGTGQALAIEFIVTFFLMFVIVAVATDTRAVGELAGIAIGGMVMLNILVAGRATGGSMNPARTLGPAIATENFKGLWIYIVAPTAGAVAGAAGYTAVKLRQDTAAESARRNEGSLSRLGESSQAVVPSRSSGNSAWKLDGGSWLCLAGECRKECSELEHLNVILCYKEANQIAEFLGKNEAGDEGLV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3315281 3317159 - CmoCh04G006670.1 Cmo04g00667 379642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00667 313 Gene3D Glycerol uptake facilitator protein. 4 237 IPR023271 -
Cmo04g00667 313 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 9 232 - -
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 14 33 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 54 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 135 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 166 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 MobiDBLite consensus disorder prediction 234 259 - -
Cmo04g00667 313 PANTHER AQUAPORIN NIP2-1 9 232 IPR034294 -
Cmo04g00667 313 ProSitePatterns MIP family signature. 72 80 IPR022357 -
Cmo04g00667 313 Pfam Major intrinsic protein 10 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00667 313 SUPERFAMILY Aquaporin-like 10 226 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00667 Cmo-Chr4:3315281 Cmo15g01411 Cmo-Chr15:9615452 4.50E-95 dispersed
Cmo04g00667 Cmo-Chr4:3315281 Cmo02g00977 Cmo-Chr2:6022903 5.16E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00667 K09874 - dcr:108227578 307.375