Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00679 ATGACTTGCTTCCCTTTTTTGTTCGGTAAGAGGGCGAAATCCCCAACGGGAAGTGTTGGCAACGACGAAGAACTTTCAGGCATGCACAATGTTAGACTATATACATACAAAGAGCTAAAAGTTGCAACCCAAGATTTCAGCTTAGCGAATAAAATAGGGGAGGGCGGTTTCGGTTCTGTATACAAGGGAAGGCTAAGAAATGGAAAGCTTGCTGCCATAAAAGTTCTTTCGGCTCAATCGAGACAAGGATTGAAGGAATTCTTGGCTGAAACTAAAGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGAGAATAATCATAGAATTCTTGTCTATAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTTGGGCGAGGTTCCAGTAGTCTCCAGTTTGATTGGCGAAGTAGGTCTCGGATTTGCATTGGAATTGCACGCGGGCTTGCCTTCCTTCATGAGGATGTACAGCCATATATCATTCATAGAGATATCAAAGCAAGTAACATTCTTCTTGACCGTGATCTCACTCCTAAGATTTCAGATTTCGGCCTTGCGAGGCTCGTTCCAGCCAACATGTCTCATATCAGTACCGGAGTGGCAGGAACAATTGGTTACTTGGCACCCGAATATGCGATAAGAGGGCAGGTGACGCGAAAATCAGATATTTACAGTTTCGGCGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACAAAAACACGAAGTTACCAATTGGAGAGCAATATCTTCTCGAAACGGCATGGAATCTTTATGAGCAAGGAGCGCTCGTTCTGCTCGTAGATATGTCGTTGAACGGCGACTTCGATGCTGAGGAGGCTTGTAAATATATTAAGATTGGTCTACTTTGCACACAAGACAGTCCGAAGCTCCGCCCATCGATGTCGACTGTGGTAAAGATGCTAATGGGTGAGATGAGCGTCGAAGATAGAAAGATAACGAAACCGGGGCTGCTTTCGGACCTCATGGATCCAAGAGGAAAGATTCCAGAGGAAAATAAAGGGTCTGATGGTCTGTTCTCTGGATCAAACACCCTTGGAAACTCAACAACATCATCTGAACCCTCAACTGTTACAACTGCAACCTTCACTGCACGATATGATAGCAACATCTGA 1161 44.53 MTCFPFLFGKRAKSPTGSVGNDEELSGMHNVRLYTYKELKVATQDFSLANKIGEGGFGSVYKGRLRNGKLAAIKVLSAQSRQGLKEFLAETKVISVIEHENLVQLYGCCVENNHRILVYNYLENNSLAQTLLGRGSSSLQFDWRSRSRICIGIARGLAFLHEDVQPYIIHRDIKASNILLDRDLTPKISDFGLARLVPANMSHISTGVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNKNTKLPIGEQYLLETAWNLYEQGALVLLVDMSLNGDFDAEEACKYIKIGLLCTQDSPKLRPSMSTVVKMLMGEMSVEDRKITKPGLLSDLMDPRGKIPEENKGSDGLFSGSNTLGNSTTSSEPSTVTTATFTARYDSNI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3370962 3374423 + CmoCh04G006790.1 Cmo04g00679 379654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00679 386 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Cmo04g00679 386 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Cmo04g00679 386 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 351 - -
Cmo04g00679 386 Gene3D Transferase(Phosphotransferase) domain 1 122 332 - -
Cmo04g00679 386 SMART serkin_6 46 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00679 386 MobiDBLite consensus disorder prediction 333 373 - -
Cmo04g00679 386 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Cmo04g00679 386 Pfam Protein tyrosine and serine/threonine kinase 48 316 IPR001245 GO:0004672|GO:0006468
Cmo04g00679 386 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00679 386 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 351 - -
Cmo04g00679 386 CDD STKc_IRAK 52 319 - -
Cmo04g00679 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cmo04g00679 386 MobiDBLite consensus disorder prediction 352 373 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00679 Cmo16g00508 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00679 Cmo-Chr4:3370962 Cmo14g00064 Cmo-Chr14:322454 3.37E-116 dispersed
Cmo18g00337 Cmo-Chr18:2202972 Cmo04g00679 Cmo-Chr4:3370962 1.72E-95 dispersed
Cmo04g00611 Cmo-Chr4:3037463 Cmo04g00679 Cmo-Chr4:3370962 1.59E-166 transposed
Cmo07g00976 Cmo-Chr7:4795016 Cmo04g00679 Cmo-Chr4:3370962 7.28E-125 transposed
Cmo16g00508 Cmo-Chr16:2450461 Cmo04g00679 Cmo-Chr4:3370962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74240 PF07714 PK_Tyr_Ser-Thr 1.60E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00679 - - csv:101216433 626.32